Variant report
| Variant | esv3393643 |
|---|---|
| Chromosome Location | chr2:53658078-53658578 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs17044670 | chr2:53658093-53658094 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 2 | rs147921778 | chr2:53658128-53658129 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs568255939 | chr2:53658129-53658130 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs536026524 | chr2:53658134-53658135 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs74461800 | chr2:53658184-53658185 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs116809715 | chr2:53658191-53658192 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs145899942 | chr2:53658198-53658199 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs558224612 | chr2:53658205-53658206 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs115516953 | chr2:53658224-53658225 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs118180275 | chr2:53658254-53658255 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs111850293 | chr2:53658281-53658282 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs17044672 | chr2:53658392-53658393 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 13 | rs138386390 | chr2:53658408-53658409 | Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs541616473 | chr2:53658411-53658412 | Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs574619763 | chr2:53658438-53658439 | Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:63)
| Disease | PMID | Source |
|---|---|---|
| Medulloblastoma | 21979893 | CNVD |
| Lynch syndrome | 18415027 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Diffuse large b-cell lymphoma | 18287131 | CNVD |
| Ovarian neoplasms | 16753589 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Adrenal tumor | 17535989 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Medulloblastoma | 17522785 | CNVD |
| Cancer | 23418310 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Ependymoma | 16718352 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Cancer | 20164919 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Follicular lymphoma | 20505157 | CNVD |
| Autism | 17483303 | CNVD |
| Myofibroblastic sarcoma | 19369631 | CNVD |
| Esophageal adenocarcinoma | 18519675 | CNVD |
| Medulloblastoma | 20607354 | CNVD |
| Leukemia | 18628472 | CNVD |
| Autism | 22495311 | CNVD |
| Autism | 18522746 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Neuroblastoma | 21508638 | CNVD |
| Neurodevelopmental disorder | 22521361 | CNVD |
| Melanoma | 18172304 | CNVD |
| Cancer | 16751803 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Williams Syndrome | 20824207 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| abnormal development | 18461090 | CNVD |
| Lung adenocarcinoma | 17086460 | CNVD |
| Retinoblastoma | 22278416 | CNVD |
| Cancer | 21183584 | CNVD |
| Breast cancer | 16397240 | CNVD |
| Lung cancer | 17086460 | CNVD |
| Chronic lymphocytic leukemia | 17053054 | CNVD |
| Hereditary non-polyposis colorectal cancer | 19566914 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Acute lymphoblastic leukemia | 21980252 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Developmental delay | 21147756 | CNVD |
| Breast cancer | 22522925 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:53657200-53658400 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr2:53658400-53659000 | Enhancers | Hela-S3 | cervix |
| 3 | chr2:53658400-53659200 | Flanking Active TSS | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
