Variant report

Variant	esv3395036
Chromosome Location	chr1:73802264-73808462
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FPGT-3	chr1:73801129-73804560	ENSG00000233973
2	lnc-FPGT-3	chr1:73801129-73804559	XLOC_000256

Extended variants
information (count: 80 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:80 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs568056381	chr1:73802281-73802282	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs115893434	chr1:73802293-73802294	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs373240532	chr1:73802404-73802405	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs145395850	chr1:73802437-73802438	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs576640743	chr1:73802438-73802439	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs545292689	chr1:73802467-73802468	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs147743433	chr1:73802487-73802488	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs572239808	chr1:73802491-73802492	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs140025912	chr1:73802499-73802500	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs560995069	chr1:73802537-73802538	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs530045383	chr1:73802554-73802555	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs184558522	chr1:73802555-73802556	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs577970699	chr1:73802556-73802557	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs112433452	chr1:73802571-73802572	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs560448030	chr1:73802590-73802591	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs369336578	chr1:73802591-73802592	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs149820066	chr1:73802593-73802594	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs368902099	chr1:73802605-73802606	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs145798794	chr1:73802614-73802615	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs565868530	chr1:73802630-73802631	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs376436110	chr1:73802633-73802634	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs189394938	chr1:73802640-73802641	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs548306225	chr1:73802650-73802651	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs568119588	chr1:73802685-73802686	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs527599816	chr1:73802702-73802703	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs536662170	chr1:73802744-73802745	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs569048816	chr1:73802819-73802820	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs556887128	chr1:73802924-73802925	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs114227994	chr1:73802937-73802938	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs539302380	chr1:73802944-73802945	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs558766680	chr1:73802981-73802982	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs539557381	chr1:73803011-73803012	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs148985278	chr1:73803047-73803048	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs557923857	chr1:73803068-73803069	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs554654150	chr1:73803073-73803074	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs574844073	chr1:73803080-73803081	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs144637210	chr1:73803095-73803096	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs192853013	chr1:73803105-73803106	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs563681350	chr1:73803116-73803117	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs185209114	chr1:73803131-73803132	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs572831453	chr1:73803157-73803158	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs546113358	chr1:73803190-73803191	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs549176808	chr1:73803342-73803343	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs376690878	chr1:73803363-73803364	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs115013089	chr1:73803445-73803446	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs146696578	chr1:73803528-73803529	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs1923207	chr1:73803542-73803543	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs372404623	chr1:73803640-73803641	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs575084363	chr1:73803649-73803650	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs542071634	chr1:73803713-73803714	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Melanoma	17363583	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	17133270	CNVD
Type 2 diabetes	21956041	CNVD
Uveal melanoma	20484589	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
abnormal development	18461090	CNVD
Ewing''s sarcoma	17952124	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Poland''s syndrome	22110015	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioblastoma multiforme	21922591	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Cancer	22429812	CNVD
Effusion lymphoma	18079361	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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