Variant report
| Variant | esv3395463 |
|---|---|
| Chromosome Location | chr7:57304510-57308808 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs568549047 | chr7:57306462-57306463 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs145140727 | chr7:57306463-57306464 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs547827225 | chr7:57306464-57306465 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs373392843 | chr7:57306474-57306475 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs146877381 | chr7:57306496-57306497 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs140739847 | chr7:57306508-57306509 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs552584732 | chr7:57306511-57306512 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs150451604 | chr7:57306528-57306529 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs371826115 | chr7:57306572-57306573 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs11135631 | chr7:57306577-57306578 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 11 | rs538030422 | chr7:57306598-57306599 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs376478949 | chr7:57306601-57306602 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs11772485 | chr7:57306624-57306625 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
| 14 | rs574615023 | chr7:57306639-57306640 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs181237320 | chr7:57306728-57306729 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs561087741 | chr7:57306729-57306730 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs573330203 | chr7:57306734-57306735 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs59329904 | chr7:57306744-57306745 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 19 | rs76360841 | chr7:57306777-57306778 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:82)
| Disease | PMID | Source |
|---|---|---|
| Neuroblastoma | 18923191 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Glioma | 21971842 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Oral cancer | 21386901 | CNVD |
| colon cancer | 17210682 | CNVD |
| Lung adenocarcinoma | 21810691 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Hypothalamic hamartomas | 18252217 | CNVD |
| Human rectal carcinomas | 16397240 | CNVD |
| Peripheral t-cell lymphoma | 19118030 | CNVD |
| Medulloblastoma | 18056178 | CNVD |
| Basal cell lymphoma | 17170743 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Seminomas | 18059402 | CNVD |
| Testicular cancer | 18059402 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Autism | 19415332 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Malaria | 21533027 | CNVD |
| Melanoma | 18172304 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| head and neck squamous cell carcinoma | 19289630 | CNVD |
| Stenocardia | 21860640 | CNVD |
| Vasospasm | 21860640 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Autism | 22495311 | CNVD |
| Biliary cancer | 19435499 | CNVD |
| Cancer | 21183584 | CNVD |
| Follicular lymphoma | 20505157 | CNVD |
| Williams-beuren syndrome | 22470819 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Multiple myeloma | 16461302 | CNVD |
| Glioblastoma multiforme | 21750150 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Gastric cancer | 24379144 | CNVD |
| Glioblastoma multiforme | 17002787 | CNVD |
| Lung cancer | 18438408 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Breast cancer | 21364760 | CNVD |
| head and neck squamous cell carcinoma | 17671120 | CNVD |
| Lissencephaly | 21572526 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Breast cancer | 16397240 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Cutaneous T-cell lymphoma | 21881587 | CNVD |
| Glioblastoma multiforme | 22291905 | CNVD |
| Glioblastoma multiforme | 19435819 | CNVD |
| Intracranial ependymoma | 16609018 | CNVD |
| Lung cancer | 21911935 | CNVD |
| Urothelial cell carcinoma | 18451213 | CNVD |
| Breast cancer | 21990379 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| Colorectal cancer | 19455253 | CNVD |
| Lung cancer | 17925434 | CNVD |
| Glioma | 24330732 | CNVD |
| Lung adenocarcinoma | 23938291 | CNVD |
| Glioma | 17634744 | CNVD |
| Oral squamous cell carcinoma | 19276369 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| Lung cancer | 20031968 | CNVD |
| Glioblastoma | 17090523 | CNVD |
| Esophageal squamous carcinoma | 18405350 | CNVD |
| Glioma | 17123091 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Medullary thyroid carcinoma | 18765511 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Williams Syndrome | 20824207 | CNVD |
| early-passage human iPS cells | 21368824 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:57306400-57306800 | ZNF genes & repeats | Fetal Kidney | kidney |
| 2 | chr7:57306600-57306800 | ZNF genes & repeats | Pancreas | Pancrea |
