Variant report

Variant	esv3396468
Chromosome Location	chr8:19390516-19391087
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr8:19390970-19391419	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19391042..19393600-chr8:19578654..19580566,2	MCF-7	breast:

Variant related genes	Relation type
CSGALNACT1	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 116 )

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs370211561	chr8:19390529-19390530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs35228789	chr8:19390561-19390562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs2975483	chr8:19390567-19390568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs568605735	chr8:19390609-19390610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs573049153	chr8:19390620-19390621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs73212600	chr8:19390646-19390647	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs145367045	chr8:19390673-19390674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs78282856	chr8:19390698-19390699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs539808793	chr8:19390709-19390710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs79284320	chr8:19390710-19390711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs372134973	chr8:19390716-19390717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs573153129	chr8:19390719-19390720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs149196855	chr8:19390723-19390724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs113338981	chr8:19390727-19390728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs564885886	chr8:19390732-19390733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs555530183	chr8:19390735-19390736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs575308275	chr8:19390745-19390746	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs185942864	chr8:19390766-19390767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs368094696	chr8:19390782-19390783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs563994791	chr8:19390785-19390786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs538381403	chr8:19390797-19390798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs143322301	chr8:19390808-19390809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs532199485	chr8:19390835-19390836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs539825429	chr8:19390845-19390846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs2975484	chr8:19390897-19390898	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs377536729	chr8:19390913-19390914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs558294856	chr8:19390945-19390946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs76657621	chr8:19390960-19390961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs568744727	chr8:19390991-19390992	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs76817873	chr8:19390996-19390997	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs17128582	chr8:19391004-19391005	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs578000632	chr8:19391015-19391016	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs570843494	chr8:19391017-19391018	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs146880655	chr8:19391020-19391021	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs368349866	chr8:19391044-19391045	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:116)

Disease	PMID	Source
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Epilepsy	22083797	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	17603634	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Bladder cancer	21909424	CNVD
Multiple myeloma	17550852	CNVD
Pancreatic cancer	21811587	CNVD
Multiple myeloma	16461302	CNVD
Developmental delay	21373258	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21364760	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cancer	18840272	CNVD
Breast cancer	19602461	CNVD
Osteosarcoma	19286668	CNVD
Prostate cancer	19242612	CNVD
Prostate cancer	19258508	CNVD
small cell lung cancer	20016488	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Gastric adenocarcinoma	19115996	CNVD
Colorectal cancer	19455253	CNVD
Prostate cancer	22341455	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19379400-19434200	Weak transcription	Placenta	Placenta
2	chr8:19380800-19394600	Weak transcription	Primary B cells from cord blood	blood
3	chr8:19380800-19397200	Weak transcription	Right Ventricle	heart
4	chr8:19385400-19397200	Weak transcription	Left Ventricle	heart
5	chr8:19385800-19394400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:19386400-19398200	Weak transcription	Ovary	ovary
7	chr8:19387000-19393200	Weak transcription	Hela-S3	cervix
8	chr8:19387000-19397000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr8:19389000-19408000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:19390400-19393200	Weak transcription	A549	lung
11	chr8:19390400-19395800	Weak transcription	Primary T cells from cord blood	blood
12	chr8:19390400-19408200	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links