Variant report

Variant	esv3396591
Chromosome Location	chr11:25406176-25408324
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:25383494..25385601-chr11:25405525..25407824,2	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:89 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs371472478	chr11:25406183-25406184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs553553559	chr11:25406262-25406263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs538153559	chr11:25406287-25406288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs115338504	chr11:25406301-25406302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs4922713	chr11:25406316-25406317	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs565349845	chr11:25406328-25406329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs183301111	chr11:25406400-25406401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs539115335	chr11:25406415-25406416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs553630107	chr11:25406423-25406424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs184938330	chr11:25406428-25406429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs149429834	chr11:25406468-25406469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs562157998	chr11:25406504-25406505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs529396729	chr11:25406512-25406513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs533978181	chr11:25406513-25406514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs376021282	chr11:25406539-25406540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs575615307	chr11:25406556-25406557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs544604758	chr11:25406672-25406673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs189802911	chr11:25406679-25406680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs561621360	chr11:25406680-25406681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs530270589	chr11:25406732-25406733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs376956159	chr11:25406742-25406743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs376029044	chr11:25406775-25406776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs183167409	chr11:25406779-25406780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs532676372	chr11:25406802-25406803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs144693128	chr11:25406833-25406834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs569309267	chr11:25406834-25406835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs538217089	chr11:25406891-25406892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs80130197	chr11:25406921-25406922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs533208877	chr11:25406946-25406947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs371971619	chr11:25407006-25407007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs66488235	chr11:25407098-25407099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs147665479	chr11:25407109-25407110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs76254795	chr11:25407111-25407112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs200493763	chr11:25407113-25407114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs79092420	chr11:25407115-25407116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs199845464	chr11:25407117-25407118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs201878823	chr11:25407119-25407120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs374520805	chr11:25407132-25407133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs3080141	chr11:25407133-25407134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs11028647	chr11:25407135-25407136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs61397084	chr11:25407141-25407142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs568337104	chr11:25407153-25407154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs551731978	chr11:25407162-25407163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs2404081	chr11:25407168-25407169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs2404082	chr11:25407170-25407171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs56062104	chr11:25407172-25407173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs71044352	chr11:25407173-25407174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs2896744	chr11:25407177-25407178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs113130539	chr11:25407178-25407179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs59988529	chr11:25407179-25407180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25405400-25410000	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links