Variant report

Variant	esv3396651
Chromosome Location	chr5:28966495-28968593
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs184420913	chr5:28967838-28967839	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs544372894	chr5:28967845-28967846	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs548227230	chr5:28967856-28967857	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs569707932	chr5:28967863-28967864	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs537184263	chr5:28967890-28967891	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs146359403	chr5:28967907-28967908	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs570574706	chr5:28967921-28967922	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs74889419	chr5:28967922-28967923	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs552998998	chr5:28967965-28967966	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs189768984	chr5:28967979-28967980	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs116337576	chr5:28967981-28967982	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs557036387	chr5:28968005-28968006	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs575295457	chr5:28968020-28968021	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs533503101	chr5:28968046-28968047	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs192777060	chr5:28968048-28968049	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs534390713	chr5:28968070-28968071	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs137951723	chr5:28968104-28968105	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs546771528	chr5:28968123-28968124	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs560583779	chr5:28968129-28968130	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs532607262	chr5:28968144-28968145	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs373411857	chr5:28968150-28968151	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs111936670	chr5:28968156-28968157	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs530369208	chr5:28968218-28968219	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs16899662	chr5:28968268-28968269	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs559019515	chr5:28968270-28968271	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs554877884	chr5:28968306-28968307	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs548510402	chr5:28968336-28968337	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs376285330	chr5:28968356-28968357	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs145959178	chr5:28968399-28968400	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs200220665	chr5:28968425-28968426	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs552404033	chr5:28968447-28968448	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs570882868	chr5:28968494-28968495	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs534519149	chr5:28968509-28968510	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs546819821	chr5:28968517-28968518	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs568251282	chr5:28968526-28968527	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs184440019	chr5:28968532-28968533	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs532889160	chr5:28968553-28968554	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs200070811	chr5:28968554-28968555	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs557271350	chr5:28968556-28968557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs200820559	chr5:28968566-28968567	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Kartagener syndrome	16639409	CNVD
Medulloblastoma	21979893	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Cervical squamous cell carcinoma	21590768	CNVD
Non-small cell lung cancer	20864512	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Multiple myeloma	17550852	CNVD
prenatal diagnosis	22389664	CNVD
Bladder cancer	21909424	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Breast cancer	21858162	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Cancer	16751803	CNVD
Breast cancer	16608533	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Intellectual disability	22102821	CNVD
Renal cell carcinoma	18194544	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Non-small cell lung cancer	19010865	CNVD
Glioblastoma multiforme	22286061	CNVD
Compulsive disorder	18923513	CNVD
Epilepsy	18923513	CNVD
Prader-willi syndrome	18923513	CNVD
small cell lung cancer	20016488	CNVD
Ovarian cancer	21720365	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioma	20126413	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	22032731	CNVD
Esophageal cancer	20955586	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21364760	CNVD
Breast cancer	20409316	CNVD
Medulloblastoma	19270706	CNVD
Breast cancer	19553991	CNVD
Lung cancer	19553991	CNVD
Melanoma	19553991	CNVD
Ovarian cancer	19553991	CNVD
Prostate cancer	19553991	CNVD
Non-small cell lung cancer	17156491	CNVD
Breast cancer	17133270	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:28967800-28968600	Enhancers	HepG2	liver

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