Variant report
| Variant | esv3396718 |
|---|---|
| Chromosome Location | chr2:31791559-31792002 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:31784752..31786279-chr2:31789364..31791846,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs28383008 | chr2:31791562-31791563 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs192693923 | chr2:31791579-31791580 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs566727672 | chr2:31791589-31791590 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs531875798 | chr2:31791610-31791611 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs550500418 | chr2:31791612-31791613 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs570581838 | chr2:31791647-31791648 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs17546253 | chr2:31791679-31791680 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 8 | rs546232231 | chr2:31791742-31791743 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs34600093 | chr2:31791758-31791759 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs548942665 | chr2:31791791-31791792 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs7594951 | chr2:31791793-31791794 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
| 12 | rs182753903 | chr2:31791813-31791814 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs28383007 | chr2:31791892-31791893 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs572865091 | chr2:31791894-31791895 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs28383006 | chr2:31791928-31791929 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 16 | rs28383005 | chr2:31791995-31791996 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs146293045 | chr2:31791998-31791999 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:61)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17603634 | CNVD |
| Cancer | 16751803 | CNVD |
| Neuroblastoma | 16790693 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Breast cancer | 17393978 | CNVD |
| Acute lymphoblastic leukemia | 21098271 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Lynch syndrome | 18415027 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Diffuse large b-cell lymphoma | 18287131 | CNVD |
| Ovarian neoplasms | 16753589 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Adrenal tumor | 17535989 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Medulloblastoma | 17522785 | CNVD |
| Cancer | 23418310 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Ependymoma | 16718352 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Acute lymphoblastic leukemia | 18458336 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Bladder cancer | 21909424 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Cancer | 20164919 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Autism | 22495311 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Follicular lymphoma | 20505157 | CNVD |
| Autism | 17483303 | CNVD |
| Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
| Myofibroblastic sarcoma | 19369631 | CNVD |
| Esophageal adenocarcinoma | 18519675 | CNVD |
| Medulloblastoma | 20607354 | CNVD |
| Medulloblastoma | 16968546 | CNVD |
| Leukemia | 18628472 | CNVD |
| Autism | 19521722 | CNVD |
| Autism | 18522746 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Myxofibrosarcoma | 16751306 | CNVD |
| Non-small cell lung cancer | 18927303 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Lung cancer | 16740712 | CNVD |
| Hereditary gingival fibromatosis | 19633868 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Breast cancer | 21509527 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Barrett''s adenocarcinoma | 18663352 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:31789400-31792200 | Weak transcription | Liver | Liver |
