Variant report

Variant	esv3397678
Chromosome Location	chr7:16438277-16440775
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:16439058..16440964-chr7:16460442..16462203,2	MCF-7	breast:
2	chr7:16437189..16440785-chr7:16463112..16464821,3	MCF-7	breast:
3	chr7:16436062..16438376-chr7:16440811..16443657,2	K562	blood:
4	chr7:16304631..16307990-chr7:16437547..16440554,3	K562	blood:
5	chr7:16438588..16440667-chr7:16440672..16442750,2	K562	blood:
6	chr7:16438588..16440667-chr7:16440672..16442750,2	K562	blood:
7	chr7:16435726..16438390-chr7:16620305..16622722,2	K562	blood:
8	chr7:16382268..16383861-chr7:16437645..16440357,2	K562	blood:
9	chr7:16431022..16434211-chr7:16436122..16439402,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000214960	chromatin interactions

Extended variants
information (count: 244 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:244 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs553840566	chr7:16438286-16438287	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs546838291	chr7:16438299-16438300	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs374983380	chr7:16438304-16438305	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs568246955	chr7:16438316-16438317	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs535688046	chr7:16438317-16438318	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs181012971	chr7:16438319-16438320	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs569383372	chr7:16438337-16438338	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs546009223	chr7:16438348-16438349	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs185241772	chr7:16438356-16438357	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs6461248	chr7:16438357-16438358	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs181169680	chr7:16438365-16438366	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs533927006	chr7:16438374-16438375	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs556056637	chr7:16438388-16438389	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs187015633	chr7:16438394-16438395	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs117178734	chr7:16438395-16438396	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs544829614	chr7:16438405-16438406	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs562699452	chr7:16438415-16438416	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs115550275	chr7:16438416-16438417	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs386710740	chr7:16438434-16438435	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs200291107	chr7:16438436-16438437	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs374741718	chr7:16438437-16438438	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs562056530	chr7:16438443-16438444	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs183681478	chr7:16438456-16438457	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs186433049	chr7:16438465-16438466	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs144958345	chr7:16438468-16438469	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs6461250	chr7:16438476-16438477	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs551941823	chr7:16438496-16438497	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs182292775	chr7:16438497-16438498	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs534244098	chr7:16438501-16438502	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs114396973	chr7:16438504-16438505	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs567954723	chr7:16438510-16438511	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs538106890	chr7:16438546-16438547	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs556360836	chr7:16438552-16438553	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs577780723	chr7:16438553-16438554	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs373509565	chr7:16438562-16438563	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs545179420	chr7:16438563-16438564	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs557457595	chr7:16438574-16438575	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs572843643	chr7:16438589-16438590	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs369700583	chr7:16438594-16438595	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs540234359	chr7:16438597-16438598	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs376516654	chr7:16438609-16438610	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs186567033	chr7:16438616-16438617	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs544147027	chr7:16438624-16438625	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs562758732	chr7:16438647-16438648	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs533192274	chr7:16438656-16438657	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs115295062	chr7:16438663-16438664	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs567009582	chr7:16438667-16438668	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs28521876	chr7:16438668-16438669	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs114832020	chr7:16438676-16438677	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs567521776	chr7:16438686-16438687	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Rubinstein-Taybi syndrome	22470819	CNVD
Alzheimer''s disease	22166940	CNVD
Abnormal phenotypes	18644119	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Bladder cancer	21909424	CNVD
Cancer	21183584	CNVD
Autism	20808228	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16432600-16439600	Weak transcription	Ovary	ovary
2	chr7:16434400-16459000	Weak transcription	Stomach Mucosa	stomach
3	chr7:16435200-16442800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:16435800-16439600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:16435800-16440600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:16435800-16444400	ZNF genes & repeats	K562	blood
7	chr7:16436000-16440200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chr7:16436200-16440400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr7:16436200-16440400	ZNF genes & repeats	Fetal Lung	lung
10	chr7:16436200-16443600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr7:16436400-16440000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
12	chr7:16436400-16440000	ZNF genes & repeats	Brain Angular Gyrus	brain
13	chr7:16436400-16440200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:16436400-16440400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr7:16436400-16440400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
16	chr7:16436400-16440400	ZNF genes & repeats	Fetal Brain Male	brain
17	chr7:16436400-16440400	ZNF genes & repeats	Fetal Heart	heart
18	chr7:16436400-16440400	ZNF genes & repeats	Fetal Kidney	kidney
19	chr7:16436400-16440600	ZNF genes & repeats	Fetal Muscle Leg	muscle
20	chr7:16436600-16439600	ZNF genes & repeats	Gastric	stomach
21	chr7:16436600-16440000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
22	chr7:16436600-16440000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
23	chr7:16436600-16440000	ZNF genes & repeats	Dnd41	blood
24	chr7:16436600-16440200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
25	chr7:16436600-16440400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:16436600-16440400	ZNF genes & repeats	Esophagus	oesophagus
27	chr7:16436600-16440400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
28	chr7:16436800-16438600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
29	chr7:16436800-16440000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:16436800-16440200	ZNF genes & repeats	Pancreas	Pancrea
31	chr7:16436800-16440200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
32	chr7:16436800-16440400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr7:16436800-16440600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:16437000-16439200	Weak transcription	Spleen	Spleen
35	chr7:16437000-16440400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr7:16437000-16442600	Weak transcription	Right Ventricle	heart
37	chr7:16437200-16440400	ZNF genes & repeats	HSMM	muscle
38	chr7:16437400-16440400	ZNF genes & repeats	Brain Substantia Nigra	brain
39	chr7:16437600-16439000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr7:16437600-16439800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:16437600-16440000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
42	chr7:16438000-16438400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
43	chr7:16438000-16439600	ZNF genes & repeats	Fetal Stomach	stomach
44	chr7:16438200-16439400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr7:16438200-16440000	ZNF genes & repeats	Fetal Intestine Small	intestine
46	chr7:16438200-16440400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
47	chr7:16438400-16440000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr7:16438800-16439800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
49	chr7:16438800-16440600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
50	chr7:16439000-16439400	ZNF genes & repeats	Lung	lung

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