Variant report

Variant	esv3397747
Chromosome Location	chr5:147245959-147250557
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:84)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:84 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr5:147248491-147249068	H1-hESC	embryonic stem cell:	n/a	n/a
2	ATF2	chr5:147248499-147249707	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr5:147248613-147249016	H1-hESC	embryonic stem cell:	n/a	n/a
4	BCL11A	chr5:147248729-147248902	H1-hESC	embryonic stem cell:	n/a	n/a
5	BRCA1	chr5:147248624-147249087	H1-hESC	embryonic stem cell:	n/a	n/a
6	CEBPB	chr5:147248719-147249047	H1-hESC	embryonic stem cell:	n/a	n/a
7	CHD1	chr5:147248482-147249422	H1-hESC	embryonic stem cell:	n/a	n/a
8	CHD1	chr5:147249813-147250048	H1-hESC	embryonic stem cell:	n/a	n/a
9	CHD2	chr5:147248581-147249237	H1-hESC	embryonic stem cell:	n/a	n/a
10	CTCF	chr5:147248001-147248045	Lung_OC	lung:	n/a	n/a
11	EGR1	chr5:147248636-147249071	H1-hESC	embryonic stem cell:	n/a	n/a
12	EP300	chr5:147248576-147248991	H1-hESC	embryonic stem cell:	n/a	n/a
13	FOXA2	chr5:147247525-147247842	A549	lung:	n/a	n/a
14	GABPA	chr5:147248651-147248734	HepG2	liver:	n/a	n/a
15	GABPA	chr5:147248652-147248736	HepG2	liver:	n/a	n/a
16	GATA3	chr5:147248947-147249536	MCF-7	breast:	n/a	n/a
17	GATA3	chr5:147248973-147249371	MCF-7	breast:	n/a	n/a
18	GATA3	chr5:147247593-147247805	MCF-7	breast:	n/a	n/a
19	GATA3	chr5:147248847-147249479	MCF-7	breast:	n/a	n/a
20	GTF2F1	chr5:147248647-147249093	H1-hESC	embryonic stem cell:	n/a	n/a
21	JUND	chr5:147248701-147249099	H1-hESC	embryonic stem cell:	n/a	n/a
22	JUND	chr5:147248743-147249084	H1-hESC	embryonic stem cell:	n/a	n/a
23	MAFK	chr5:147248656-147248933	H1-hESC	embryonic stem cell:	n/a	n/a
24	MAX	chr5:147248723-147249034	H1-hESC	embryonic stem cell:	n/a	n/a
25	MAX	chr5:147248718-147249162	H1-hESC	embryonic stem cell:	n/a	n/a
26	MXI1	chr5:147248728-147249131	H1-hESC	embryonic stem cell:	n/a	n/a
27	MYC	chr5:147248727-147249047	H1-hESC	embryonic stem cell:	n/a	n/a
28	NANOG	chr5:147248661-147248986	H1-hESC	embryonic stem cell:	n/a	n/a
29	NANOG	chr5:147248634-147248972	H1-hESC	embryonic stem cell:	n/a	n/a
30	POLR2A	chr5:147250405-147251061	H1-hESC	embryonic stem cell:	n/a	n/a
31	POLR2A	chr5:147248513-147250098	H1-hESC	embryonic stem cell:	n/a	n/a
32	POLR2A	chr5:147246678-147248491	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr5:147247167-147247209	H1-hESC	embryonic stem cell:	n/a	n/a
34	POLR2A	chr5:147248706-147250088	H1-hESC	embryonic stem cell:	n/a	n/a
35	POLR2A	chr5:147246316-147246556	H1-hESC	embryonic stem cell:	n/a	n/a
36	POLR2A	chr5:147246329-147246472	H1-hESC	embryonic stem cell:	n/a	n/a
37	POLR2A	chr5:147246476-147246510	H1-hESC	embryonic stem cell:	n/a	n/a
38	POLR2A	chr5:147246043-147246235	H1-hESC	embryonic stem cell:	n/a	n/a
39	POLR2A	chr5:147248118-147248229	H1-hESC	embryonic stem cell:	n/a	n/a
40	POLR2A	chr5:147247897-147248078	H1-hESC	embryonic stem cell:	n/a	n/a
41	POLR2A	chr5:147246108-147246140	H1-hESC	embryonic stem cell:	n/a	n/a
42	POLR2A	chr5:147246335-147246528	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr5:147247339-147247794	H1-hESC	embryonic stem cell:	n/a	n/a
44	POLR2A	chr5:147246099-147256428	H1-hESC	embryonic stem cell:	n/a	n/a
45	POLR2A	chr5:147245656-147246012	H1-hESC	embryonic stem cell:	n/a	n/a
46	POLR2A	chr5:147248269-147248465	H1-hESC	embryonic stem cell:	n/a	n/a
47	POLR2A	chr5:147246705-147247059	H1-hESC	embryonic stem cell:	n/a	n/a
48	POLR2A	chr5:147250141-147250288	H1-hESC	embryonic stem cell:	n/a	n/a
49	POLR2A	chr5:147248505-147250221	H1-hESC	embryonic stem cell:	n/a	n/a
50	POLR2A	chr5:147250333-147255187	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SCGB3A2-2	chr5:147245565-147246269	NONHSAT104430

No data

Variant related genes	Relation type
SCGB3A2	TF binding region

Extended variants
information (count: 314 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:314 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs578252686	chr5:147246034-147246035	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
2	rs200328676	chr5:147246047-147246048	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
3	rs370302158	chr5:147246050-147246051	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
4	rs554979896	chr5:147246071-147246072	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
5	rs199683850	chr5:147246128-147246129	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
6	rs564154919	chr5:147246129-147246130	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
7	rs576037072	chr5:147246130-147246131	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
8	rs12332162	chr5:147246151-147246152	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
9	rs142575787	chr5:147246172-147246173	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
10	rs376236645	chr5:147246173-147246174	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
11	rs12332164	chr5:147246203-147246204	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs561647050	chr5:147246207-147246208	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
13	rs60085083	chr5:147246210-147246211	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs199781590	chr5:147246211-147246212	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
15	rs559209957	chr5:147246214-147246215	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
16	rs200438783	chr5:147246220-147246221	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
17	rs533101643	chr5:147246225-147246226	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
18	rs368923137	chr5:147246280-147246281	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs4705211	chr5:147246281-147246282	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs374576774	chr5:147246293-147246294	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs12332165	chr5:147246323-147246324	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs375822428	chr5:147246340-147246341	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs369925219	chr5:147246396-147246397	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs537064766	chr5:147246398-147246399	Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs549427744	chr5:147246405-147246406	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs184918591	chr5:147246418-147246419	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	mRNA abundance
27	rs535188285	chr5:147246440-147246441	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs553643994	chr5:147246468-147246469	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs4705212	chr5:147246469-147246470	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs539351014	chr5:147246486-147246487	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs12332728	chr5:147246489-147246490	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs370518283	chr5:147246493-147246494	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs575960773	chr5:147246500-147246501	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs187440367	chr5:147246508-147246509	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs561404414	chr5:147246535-147246536	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs573441347	chr5:147246536-147246537	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs11168001	chr5:147246546-147246547	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs559147780	chr5:147246548-147246549	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs533060588	chr5:147246555-147246556	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs368362571	chr5:147246562-147246563	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs551617904	chr5:147246631-147246632	Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs563456058	chr5:147246643-147246644	Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs12522901	chr5:147246645-147246646	Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs12522918	chr5:147246679-147246680	Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs567754531	chr5:147246707-147246708	Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs112241418	chr5:147246719-147246720	Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs12522927	chr5:147246760-147246761	Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs375611942	chr5:147246776-147246777	Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs528489839	chr5:147246813-147246814	Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs547193751	chr5:147246845-147246846	Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Multiple myeloma	17550852	CNVD
Salivary gland tumor	18059337	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	19377443	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Renal cell carcinoma	18194544	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Renal cell carcinoma	18592004	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	17053054	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Hyperekplexia	16941485	CNVD
Myelofibrosis	22110671	CNVD
Crohn''s disease	20877625	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	17603634	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147234200-147262400	Weak transcription	Right Atrium	heart
2	chr5:147238600-147248800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:147239800-147248600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:147240000-147248800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:147240400-147248600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:147243400-147248800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:147243600-147246000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr5:147243800-147248600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr5:147244200-147247000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:147244200-147247200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:147244200-147248600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:147244600-147246000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:147244600-147247200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:147244600-147247400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr5:147244600-147248800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr5:147245200-147246400	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr5:147245200-147248800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr5:147245600-147247000	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr5:147245600-147247200	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr5:147245600-147247200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
21	chr5:147245600-147247800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
22	chr5:147246000-147246400	Active TSS	H9 Cell Line	embryonic stem cell
23	chr5:147246000-147246600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr5:147246200-147247400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:147246400-147246600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr5:147246400-147246600	Transcr. at gene 5' and 3'	H9 Cell Line	embryonic stem cell
27	chr5:147246400-147247200	Genic enhancers	H1 Cell Line	embryonic stem cell
28	chr5:147246600-147246800	Active TSS	H9 Cell Line	embryonic stem cell
29	chr5:147246600-147248800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr5:147246600-147248800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr5:147246800-147247400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr5:147247000-147247200	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
33	chr5:147247000-147247200	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr5:147247200-147247600	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
35	chr5:147247200-147247600	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
36	chr5:147247200-147247600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
37	chr5:147247200-147247600	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr5:147247200-147247800	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
39	chr5:147247200-147247800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr5:147247200-147247800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
41	chr5:147247400-147247800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
42	chr5:147247400-147248000	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
43	chr5:147247600-147247800	Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr5:147247600-147248800	Active TSS	H1 Cell Line	embryonic stem cell
45	chr5:147247600-147248800	Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr5:147247600-147248800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr5:147247600-147260200	Weak transcription	Aorta	Aorta
48	chr5:147247800-147248000	Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr5:147247800-147248200	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr5:147247800-147248400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links