Variant report

Variant	esv3397834
Chromosome Location	chr10:724465-724805
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:656339..658937-chr10:722531..724771,2	MCF-7	breast:
2	chr10:717115..720273-chr10:724564..727281,3	MCF-7	breast:
3	chr10:721854..725155-chr10:733736..736400,3	MCF-7	breast:
4	chr10:723887..725590-chr10:731403..733656,2	MCF-7	breast:
5	chr10:712816..715288-chr10:723469..725023,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LARP4B-3	chr10:724395-724591	NONHSAT010869
2	lnc-LARP4B-3	chr10:724715-724736	NONHSAT010869

No data

Variant related genes	Relation type
ENSG00000151240	chromatin interactions
ENSG00000272992	chromatin interactions

Extended variants
information (count: 40 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs536097673	chr10:724465-724466	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
2	rs113155746	chr10:724466-724467	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
3	rs187060890	chr10:724501-724502	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
4	rs544901292	chr10:724516-724517	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
5	rs564987656	chr10:724531-724532	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
6	rs528138355	chr10:724537-724538	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
7	rs4881506	chr10:724543-724544	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
8	rs4881507	chr10:724548-724549	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
9	rs4881508	chr10:724555-724556	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
10	rs10904538	chr10:724576-724577	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
11	rs191487395	chr10:724604-724605	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs202028766	chr10:724609-724610	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs113680686	chr10:724615-724616	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs544331418	chr10:724617-724618	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs539760681	chr10:724618-724619	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs183629685	chr10:724619-724620	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs188782892	chr10:724634-724635	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs193245111	chr10:724638-724639	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs185309935	chr10:724640-724641	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs190155361	chr10:724647-724648	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs10904539	chr10:724648-724649	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs181443289	chr10:724649-724650	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs572346111	chr10:724666-724667	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs113552583	chr10:724668-724669	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs529319255	chr10:724671-724672	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs71494919	chr10:724678-724679	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs183469343	chr10:724679-724680	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs188393716	chr10:724687-724688	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs10904540	chr10:724697-724698	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs11595675	chr10:724699-724700	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs548660938	chr10:724733-724734	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
32	rs12777377	chr10:724743-724744	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs12781871	chr10:724747-724748	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs560819008	chr10:724756-724757	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs529736668	chr10:724757-724758	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs12777383	chr10:724758-724759	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs370298896	chr10:724762-724763	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs377552607	chr10:724777-724778	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs370142047	chr10:724788-724789	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs547279351	chr10:724796-724797	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:712200-725600	Weak transcription	Fetal Intestine Small	intestine
2	chr10:712800-726000	Weak transcription	Fetal Stomach	stomach
3	chr10:713400-728800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:716200-725600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:716200-725800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:716400-725600	Weak transcription	Fetal Heart	heart
7	chr10:716400-726400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:716400-729200	Weak transcription	Fetal Lung	lung
9	chr10:716400-732200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:716400-734200	Weak transcription	Fetal Kidney	kidney
11	chr10:718400-725600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:719600-725600	Weak transcription	Fetal Brain Male	brain
13	chr10:719800-725600	Weak transcription	Ovary	ovary
14	chr10:719800-725600	Weak transcription	Right Atrium	heart
15	chr10:719800-725800	Weak transcription	Adipose Nuclei	Adipose
16	chr10:719800-726000	Weak transcription	Brain Germinal Matrix	brain
17	chr10:721600-724600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:722000-724600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:722000-726000	Weak transcription	HSMM	muscle
20	chr10:722600-724600	Enhancers	Brain Anterior Caudate	brain
21	chr10:722600-727200	Weak transcription	NHLF	lung
22	chr10:723000-724600	Enhancers	Brain Hippocampus Middle	brain
23	chr10:723000-724600	Enhancers	Right Ventricle	heart
24	chr10:723000-724800	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr10:723000-725000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:723200-724600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:723200-724600	Enhancers	Brain Cingulate Gyrus	brain
28	chr10:723200-724600	Enhancers	Brain Substantia Nigra	brain
29	chr10:723200-724600	Enhancers	Left Ventricle	heart
30	chr10:723200-724600	Enhancers	Lung	lung
31	chr10:723200-724600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr10:723400-727400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:723600-724600	Enhancers	Aorta	Aorta
34	chr10:723600-724600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:723600-724600	Enhancers	Fetal Muscle Trunk	muscle
36	chr10:723600-727600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr10:723800-724600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:723800-724600	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr10:723800-724600	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr10:723800-724600	Enhancers	Fetal Brain Female	brain
41	chr10:723800-724600	Enhancers	Pancreas	Pancrea
42	chr10:723800-724600	Enhancers	Stomach Smooth Muscle	stomach
43	chr10:723800-724600	Enhancers	Spleen	Spleen
44	chr10:723800-724800	Enhancers	Esophagus	oesophagus
45	chr10:723800-724800	Enhancers	Gastric	stomach
46	chr10:723800-727400	Weak transcription	Osteobl	bone
47	chr10:724000-724600	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr10:724000-725000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr10:724000-725600	Weak transcription	Brain Angular Gyrus	brain
50	chr10:724000-725600	Weak transcription	HSMMtube	muscle

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