Variant report
Variant | esv3397882 |
---|---|
Chromosome Location | chr11:56524039-56524140 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs185596323 | chr11:56524045-56524046 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs199822874 | chr11:56524049-56524050 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs12420511 | chr11:56524050-56524051 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs71860533 | chr11:56524051-56524052 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs369163153 | chr11:56524056-56524057 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs373319727 | chr11:56524060-56524061 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs10896531 | chr11:56524064-56524065 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs142406638 | chr11:56524068-56524069 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs141085443 | chr11:56524072-56524073 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs150197338 | chr11:56524076-56524077 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs567034922 | chr11:56524088-56524089 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs191031824 | chr11:56524089-56524090 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs537505141 | chr11:56524094-56524095 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs11828342 | chr11:56524098-56524099 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs555740145 | chr11:56524105-56524106 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs369191857 | chr11:56524124-56524125 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs10792060 | chr11:56524126-56524127 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs71058032 | chr11:56524128-56524129 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs374543928 | chr11:56524129-56524130 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Wilms tumour | 21544195 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Gastric cancer | 17908304 | CNVD |
Multiple myeloma | 20724749 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Autism | 22495311 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Intellectual disability | 22102821 | CNVD |
Renal cell carcinoma | 18194544 | CNVD |
Glioblastoma multiforme | 21138945 | CNVD |
Prostate cancer | 18632612 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Cancer | 21637783 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Chronic lymphocytic leukemia | 21795749 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Neuroblastoma | 21484798 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Oral cancer | 21386901 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 20837533 | CNVD |
Breast cancer | 21264507 | CNVD |
Cervical cancer | 21063398 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Liposarcoma | 21253554 | CNVD |
Neuroblastoma | 18923524 | CNVD |
Neuroblastoma | 18664255 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Neuroblastoma | 17533364 | CNVD |
Breast cancer | 21364760 | CNVD |
Lung cancer | 18438408 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Pituitary adenoma | 18645599 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Smith-Lemli-Opitz syndrome | 21572526 | CNVD |
Multiple myeloma | 16461302 | CNVD |
Cancer | 16751803 | CNVD |
Seminomas | 18059402 | CNVD |
Breast cancer | 17142309 | CNVD |
Schizophrenia | 23813976 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:56520400-56524600 | Weak transcription | Dnd41 | blood |
2 | chr11:56523800-56525200 | Weak transcription | H1 Cell Line | embryonic stem cell |