Variant report

Variant	esv3398256
Chromosome Location	chr10:42390466-42395210
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:115646794..115647295-chr10:42392648..42393148,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42391195-42391205	NONHSAT012847

Extended variants
information (count: 1460 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:1460 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs140515122	chr10:42390468-42390469	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs150003316	chr10:42390470-42390471	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs11266133	chr10:42390471-42390472	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs535264851	chr10:42390473-42390474	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs148873819	chr10:42390474-42390475	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs145570552	chr10:42390475-42390476	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs200639405	chr10:42390478-42390479	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs72505278	chr10:42390479-42390480	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs398096903	chr10:42390480-42390481	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs140822768	chr10:42390484-42390485	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs111715319	chr10:42390485-42390486	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs148189636	chr10:42390494-42390495	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs141219939	chr10:42390495-42390496	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs150744691	chr10:42390496-42390497	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs10909001	chr10:42390497-42390498	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs544090054	chr10:42390499-42390500	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs557333692	chr10:42390501-42390502	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs143952845	chr10:42390502-42390503	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs576830992	chr10:42390508-42390509	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs77619352	chr10:42390510-42390511	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs200149044	chr10:42390515-42390516	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs528550736	chr10:42390516-42390517	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs140984989	chr10:42390521-42390522	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs77367492	chr10:42390522-42390523	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs144692422	chr10:42390523-42390524	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs148506738	chr10:42390524-42390525	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs201668656	chr10:42390525-42390526	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs142891481	chr10:42390528-42390529	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs151052056	chr10:42390530-42390531	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs140342370	chr10:42390531-42390532	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs57006422	chr10:42390532-42390533	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs561909019	chr10:42390543-42390544	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs9794145	chr10:42390544-42390545	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs530578108	chr10:42390546-42390547	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs9794064	chr10:42390551-42390552	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs550854453	chr10:42390556-42390557	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs28845878	chr10:42390558-42390559	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs142381702	chr10:42390562-42390563	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs144861549	chr10:42390563-42390564	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs145485071	chr10:42390565-42390566	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs148821848	chr10:42390566-42390567	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs146372609	chr10:42390567-42390568	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs143503885	chr10:42390568-42390569	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs147995874	chr10:42390574-42390575	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs144018839	chr10:42390575-42390576	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs146832068	chr10:42390576-42390577	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs546601468	chr10:42390578-42390579	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs139219103	chr10:42390579-42390580	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs112020901	chr10:42390580-42390581	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs36193002	chr10:42390586-42390587	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:146 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42397200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
2	chr10:42373600-42397200	ZNF genes & repeats	GM12878-XiMat	blood
3	chr10:42373600-42397200	ZNF genes & repeats	HUVEC	blood vessel
4	chr10:42373600-42397400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
5	chr10:42373600-42399600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:42373600-42399600	ZNF genes & repeats	Fetal Kidney	kidney
7	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
14	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
15	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
19	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
20	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
21	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
22	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
24	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
25	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
26	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
27	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
28	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
29	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
30	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
31	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
32	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
33	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
34	chr10:42373600-42400800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
35	chr10:42373600-42400800	ZNF genes & repeats	Dnd41	blood
36	chr10:42373600-42400800	ZNF genes & repeats	HMEC	breast
37	chr10:42373600-42400800	ZNF genes & repeats	HSMMtube	muscle
38	chr10:42373600-42400800	ZNF genes & repeats	NH-A	brain
39	chr10:42373600-42401200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
40	chr10:42373600-42402200	ZNF genes & repeats	Colonic Mucosa	Colon
41	chr10:42373600-42402400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
42	chr10:42373600-42402400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
43	chr10:42373600-42402400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:42373600-42402400	ZNF genes & repeats	Fetal Stomach	stomach
45	chr10:42373600-42402600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
46	chr10:42373600-42402600	ZNF genes & repeats	Liver	Liver
47	chr10:42373600-42402600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
48	chr10:42373600-42402600	ZNF genes & repeats	Fetal Brain Male	brain
49	chr10:42373600-42402800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:42373600-42402800	ZNF genes & repeats	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links