Variant report

Variant	esv3398832
Chromosome Location	chr9:15815952-15820750
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 245 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:245 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs376210026	chr9:15815972-15815973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs191256093	chr9:15816036-15816037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs563159707	chr9:15816073-15816074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs183118198	chr9:15816112-15816113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs552199892	chr9:15816134-15816135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs570767230	chr9:15816208-15816209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs534602967	chr9:15816283-15816284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs546422802	chr9:15816294-15816295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs142192824	chr9:15816297-15816298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs187613202	chr9:15816300-15816301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs557376227	chr9:15816321-15816322	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs569167171	chr9:15816335-15816336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs192708019	chr9:15816371-15816372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs557862902	chr9:15816410-15816411	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs562642477	chr9:15816457-15816458	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs184847633	chr9:15816475-15816476	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs540914351	chr9:15816499-15816500	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs114296800	chr9:15816513-15816514	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs531435415	chr9:15816522-15816523	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs74825020	chr9:15816537-15816538	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs34116060	chr9:15816567-15816568	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs151193883	chr9:15816624-15816625	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs187706221	chr9:15816631-15816632	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs73644949	chr9:15816676-15816677	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs530515859	chr9:15816703-15816704	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs377422021	chr9:15816706-15816707	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs150488231	chr9:15816762-15816763	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs192219535	chr9:15816764-15816765	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs113793457	chr9:15816779-15816780	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs149952305	chr9:15816793-15816794	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs10738414	chr9:15816796-15816797	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs184408689	chr9:15816797-15816798	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs146506185	chr9:15816819-15816820	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs13290169	chr9:15816976-15816977	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs73644950	chr9:15816978-15816979	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs190103511	chr9:15816986-15816987	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs374714921	chr9:15817008-15817009	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs529012920	chr9:15817012-15817013	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs140808718	chr9:15817050-15817051	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs77870250	chr9:15817075-15817076	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs78413934	chr9:15817081-15817082	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs558167809	chr9:15817083-15817084	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs386733043	chr9:15817119-15817120	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs534520089	chr9:15817121-15817122	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs556049423	chr9:15817177-15817178	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs566860491	chr9:15817199-15817200	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs574296925	chr9:15817218-15817219	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs144561528	chr9:15817233-15817234	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs532633532	chr9:15817260-15817261	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs556479785	chr9:15817265-15817266	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21611746	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	19835627	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15811200-15816000	Weak transcription	Pancreas	Pancrea
2	chr9:15814800-15831200	Weak transcription	Psoas Muscle	Psoas
3	chr9:15816400-15818400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:15816800-15817200	Weak transcription	Thymus	Thymus
5	chr9:15817000-15817400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
6	chr9:15817200-15817600	ZNF genes & repeats	Thymus	Thymus

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