Variant report

Variant	esv3400153
Chromosome Location	chr19:24356900-24357408
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs546921489	chr19:24356931-24356932	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs571508745	chr19:24356990-24356991	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs538502902	chr19:24357013-24357014	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs181348026	chr19:24357021-24357022	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs575278174	chr19:24357027-24357028	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs373488792	chr19:24357052-24357053	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs36121940	chr19:24357056-24357057	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs535954650	chr19:24357099-24357100	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs186455520	chr19:24357112-24357113	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs572506802	chr19:24357145-24357146	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs539801312	chr19:24357154-24357155	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs559028826	chr19:24357195-24357196	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs368980082	chr19:24357219-24357220	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs574518186	chr19:24357241-24357242	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs142643144	chr19:24357242-24357243	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs541423775	chr19:24357248-24357249	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs62115687	chr19:24357260-24357261	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs553080347	chr19:24357268-24357269	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs572988688	chr19:24357283-24357284	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs563085964	chr19:24357354-24357355	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs542251341	chr19:24357355-24357356	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs370329523	chr19:24357362-24357363	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
early-passage human iPS cells	21368824	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24337000-24359200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr19:24346000-24357200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr19:24346400-24357200	Weak transcription	Left Ventricle	heart
4	chr19:24347800-24357000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr19:24356800-24357400	ZNF genes & repeats	Ovary	ovary
6	chr19:24357400-24360200	Weak transcription	Ovary	ovary

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