Variant report

Variant	esv3400350
Chromosome Location	chr10:116649212-116653810
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116650665..116651165-chr8:43092430..43093407,2	MCF-7	breast:
2	chr10:116653223..116654731-chr10:116697488..116699570,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165832	chromatin interactions

Extended variants
information (count: 176 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:176 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs367709262	chr10:116649265-116649266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs571235514	chr10:116649380-116649381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs532161330	chr10:116649411-116649412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs186170392	chr10:116649426-116649427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs11196964	chr10:116649440-116649441	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs191091900	chr10:116649514-116649515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs61204435	chr10:116649524-116649525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs181147606	chr10:116649525-116649526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs114233564	chr10:116649546-116649547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs556452390	chr10:116649556-116649557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs58836644	chr10:116649606-116649607	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs186790242	chr10:116649628-116649629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs553794253	chr10:116649658-116649659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs76157063	chr10:116649685-116649686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs79881407	chr10:116649712-116649713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs11196965	chr10:116649715-116649716	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs531430422	chr10:116649766-116649767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs543707824	chr10:116649794-116649795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs113875312	chr10:116649795-116649796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs144282798	chr10:116649825-116649826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs191635001	chr10:116649840-116649841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs140091282	chr10:116649913-116649914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs144081520	chr10:116649946-116649947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs529746692	chr10:116649968-116649969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs71473074	chr10:116649984-116649985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs183025348	chr10:116650015-116650016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs549278753	chr10:116650049-116650050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs77229921	chr10:116650057-116650058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs556365067	chr10:116650082-116650083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs56255849	chr10:116650090-116650091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs538006211	chr10:116650101-116650102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs567469444	chr10:116650153-116650154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs538989132	chr10:116650188-116650189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs190959239	chr10:116650213-116650214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs572355997	chr10:116650244-116650245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs556316561	chr10:116650271-116650272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs111557162	chr10:116650279-116650280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs376168080	chr10:116650292-116650293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs116481995	chr10:116650293-116650294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs543621229	chr10:116650305-116650306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs553530962	chr10:116650313-116650314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs577167623	chr10:116650316-116650317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs541334649	chr10:116650330-116650331	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs112971347	chr10:116650332-116650333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs139949171	chr10:116650347-116650348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs376931736	chr10:116650378-116650379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs376620909	chr10:116650387-116650388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs373285737	chr10:116650398-116650399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs182382301	chr10:116650399-116650400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs111444331	chr10:116650414-116650415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Barrett''s syndrome	19417022	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Neuroticism	17667963	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17133270	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116642200-116655800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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