Variant report

Variant	esv3400571
Chromosome Location	chr13:94469401-94471449
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCT-3	chr13:94470677-94471035	ENSG00000224394.1
2	lnc-DCT-3	chr13:94470933-94471035	NONHSAT034714
3	lnc-DCT-3	chr13:94470677-94470844	NONHSAT034714

Extended variants
information (count: 71 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:71 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs573332011	chr13:94469422-94469423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs548931731	chr13:94469425-94469426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs192515137	chr13:94469432-94469433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs150919952	chr13:94469436-94469437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs140709990	chr13:94469437-94469438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs543760682	chr13:94469456-94469457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs150159050	chr13:94469480-94469481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs553289363	chr13:94469563-94469564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs563603917	chr13:94469572-94469573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs182627053	chr13:94469600-94469601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs375508801	chr13:94469603-94469604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs531777092	chr13:94469739-94469740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs187047072	chr13:94469762-94469763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs559181518	chr13:94469781-94469782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs528194738	chr13:94469859-94469860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs191542762	chr13:94469868-94469869	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs565798383	chr13:94469888-94469889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs564557383	chr13:94469927-94469928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs9589846	chr13:94469932-94469933	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs183899800	chr13:94469968-94469969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs141313370	chr13:94469981-94469982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs567988991	chr13:94469986-94469987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs368747999	chr13:94470003-94470004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs189070873	chr13:94470071-94470072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs202152308	chr13:94470086-94470087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs547174546	chr13:94470091-94470092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs9524238	chr13:94470102-94470103	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs539139079	chr13:94470117-94470118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs558964293	chr13:94470119-94470120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs34443448	chr13:94470123-94470124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs10599851	chr13:94470126-94470127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs398037771	chr13:94470146-94470147	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs575687999	chr13:94470188-94470189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs9589847	chr13:94470232-94470233	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs7330375	chr13:94470289-94470290	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs578020170	chr13:94470310-94470311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs143892624	chr13:94470331-94470332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs192049492	chr13:94470337-94470338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs372066459	chr13:94470449-94470450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs2026161	chr13:94470473-94470474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs375432080	chr13:94470474-94470475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs144288118	chr13:94470584-94470585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs148292034	chr13:94470686-94470687	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs564670374	chr13:94470742-94470743	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs80082016	chr13:94470749-94470750	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs548897794	chr13:94470773-94470774	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs141423583	chr13:94470820-94470821	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs561374240	chr13:94470842-94470843	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs568637772	chr13:94470917-94470918	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs150900300	chr13:94470935-94470936	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Breast cancer	21364760	CNVD
Medulloblastoma	19270706	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	19651601	CNVD
Effusion lymphoma	18079361	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21183584	CNVD
Breast cancer	17603634	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thyroid cancer	19087340	CNVD
abortions and stillbirths	19751515	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94461200-94483200	Weak transcription	Fetal Intestine Small	intestine
2	chr13:94464000-94470800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:94467200-94477000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:94467400-94470800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:94467400-94476800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:94467600-94473000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr13:94470800-94471200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr13:94470800-94471400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr13:94471000-94475600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:94471400-94471600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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