Variant report

Variant	esv3400634
Chromosome Location	chr3:102887712-102889960
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZPLD1-6	chr3:102888748-102888923	l_2419_chr3:102888747-102894491_prostate

Extended variants
information (count: 76 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:76 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs56774922	chr3:102887808-102887809	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs563237986	chr3:102887855-102887856	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs530526776	chr3:102887865-102887866	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs552254693	chr3:102887919-102887920	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs114399857	chr3:102887932-102887933	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs189895733	chr3:102887945-102887946	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs546805903	chr3:102888020-102888021	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs117808390	chr3:102888072-102888073	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs114749680	chr3:102888144-102888145	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs550477258	chr3:102888166-102888167	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs569677105	chr3:102888199-102888200	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs181584003	chr3:102888236-102888237	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs150078413	chr3:102888260-102888261	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs186309035	chr3:102888316-102888317	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs534883020	chr3:102888426-102888427	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs191063499	chr3:102888498-102888499	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs574947534	chr3:102888524-102888525	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs369078961	chr3:102888561-102888562	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs542497575	chr3:102888571-102888572	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs13325503	chr3:102888573-102888574	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs200068828	chr3:102888575-102888576	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs57835941	chr3:102888589-102888590	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs575307373	chr3:102888690-102888691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs142739520	chr3:102888692-102888693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs564009376	chr3:102888704-102888705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs147311626	chr3:102888750-102888751	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs574345572	chr3:102888767-102888768	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs369238976	chr3:102888782-102888783	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs71641533	chr3:102888783-102888784	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs528219519	chr3:102888792-102888793	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs56882697	chr3:102888793-102888794	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs6806312	chr3:102888845-102888846	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs561887093	chr3:102888907-102888908	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs529064586	chr3:102888912-102888913	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs147389348	chr3:102888929-102888930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs568862415	chr3:102888940-102888941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs138112273	chr3:102888964-102888965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs552577883	chr3:102888980-102888981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs570778098	chr3:102889069-102889070	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs377610527	chr3:102889165-102889166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs535080855	chr3:102889173-102889174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs531740826	chr3:102889182-102889183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs78711189	chr3:102889183-102889184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs568620295	chr3:102889188-102889189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs536102835	chr3:102889194-102889195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs557677292	chr3:102889222-102889223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs576040248	chr3:102889268-102889269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs545793242	chr3:102889327-102889328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs115552355	chr3:102889328-102889329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs572767432	chr3:102889335-102889336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Neurodevelopmental disorder	22521361	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	16608533	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Myelofibrosis	22110671	CNVD
Renal cell carcinoma	18765545	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102887800-102888400	Enhancers	Hela-S3	cervix
2	chr3:102887800-102888400	Enhancers	HMEC	breast
3	chr3:102888200-102888600	Enhancers	NHEK	skin
4	chr3:102888400-102892000	Weak transcription	HMEC	breast

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