Variant report

Variant	esv3400822
Chromosome Location	chr3:89508462-89511160
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:84 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569504772	chr3:89508481-89508482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs530328543	chr3:89508485-89508486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs551181000	chr3:89508487-89508488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs562348827	chr3:89508512-89508513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs566710800	chr3:89508519-89508520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs552113698	chr3:89508550-89508551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs201423646	chr3:89508576-89508577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs534167166	chr3:89508586-89508587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs372972667	chr3:89508588-89508589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs552048459	chr3:89508594-89508595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs563944796	chr3:89508618-89508619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs201391099	chr3:89508634-89508635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs201509299	chr3:89508638-89508639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs142230420	chr3:89508642-89508643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs528344825	chr3:89508668-89508669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs58738148	chr3:89508675-89508676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs558608065	chr3:89508687-89508688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570649361	chr3:89508726-89508727	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs550356889	chr3:89508727-89508728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs180769941	chr3:89508730-89508731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs185706237	chr3:89508731-89508732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs574628871	chr3:89508738-89508739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs541768901	chr3:89508756-89508757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs554076257	chr3:89508759-89508760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs572266524	chr3:89508775-89508776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs145072828	chr3:89508784-89508785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs564133962	chr3:89508795-89508796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs371381482	chr3:89508834-89508835	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs75344343	chr3:89508852-89508853	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs148240768	chr3:89508886-89508887	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs561535290	chr3:89508893-89508894	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs528920343	chr3:89508909-89508910	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs548595678	chr3:89508932-89508933	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs560443428	chr3:89508936-89508937	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs568095999	chr3:89508952-89508953	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs113415991	chr3:89508994-89508995	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs190230096	chr3:89508999-89509000	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs182362648	chr3:89509005-89509006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs552370233	chr3:89509021-89509022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs570586417	chr3:89509066-89509067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs140267354	chr3:89509111-89509112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs550109371	chr3:89509125-89509126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs551048671	chr3:89509134-89509135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs569291840	chr3:89509163-89509164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs568354437	chr3:89509172-89509173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs186970345	chr3:89509195-89509196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs34819360	chr3:89509229-89509230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs150353807	chr3:89509242-89509243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs77197588	chr3:89509294-89509295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs539614439	chr3:89509308-89509309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Soft tissue tumor	16732325	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Lung cancer	19547694	CNVD
Cancer	20164919	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89460800-89521200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:89500800-89532400	Weak transcription	Fetal Brain Female	brain
3	chr3:89501400-89521600	Weak transcription	Brain Germinal Matrix	brain
4	chr3:89504000-89519800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:89506600-89527800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:89506800-89508800	Weak transcription	Fetal Stomach	stomach
7	chr3:89508800-89509000	ZNF genes & repeats	Fetal Stomach	stomach
8	chr3:89509000-89517000	Weak transcription	Fetal Stomach	stomach

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