Variant report

Variant	esv3401193
Chromosome Location	chr19:52818960-52909749
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1118)
CpG islands
(count:3239)
Chromatin interactive
region (count:51)
LncRNA
region (count:45)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1118 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:52826601-52826666	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:52900846-52901131	HepG2	liver:	n/a	n/a
3	ATF1	chr19:52851245-52851421	K562	blood:	n/a	n/a
4	ATF1	chr19:52852027-52852098	K562	blood:	n/a	n/a
5	BACH1	chr19:52873031-52873715	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr19:52839357-52840089	H1-hESC	embryonic stem cell:	n/a	n/a
7	BCLAF1	chr19:52900832-52901375	GM12878	blood:	n/a	n/a
8	BHLHE40	chr19:52872998-52873673	GM12878	blood:	n/a	chr19:52873453-52873469
9	BHLHE40	chr19:52846961-52846970	GM12878	blood:	n/a	n/a
10	BHLHE40	chr19:52900942-52901324	GM12878	blood:	n/a	n/a
11	CBX3	chr19:52825626-52826201	K562	blood:	n/a	n/a
12	CBX3	chr19:52900872-52901266	K562	blood:	n/a	n/a
13	CBX3	chr19:52826471-52826959	K562	blood:	n/a	n/a
14	CBX3	chr19:52827033-52827512	K562	blood:	n/a	n/a
15	CBX3	chr19:52900945-52901284	K562	blood:	n/a	n/a
16	CBX3	chr19:52846823-52847179	K562	blood:	n/a	n/a
17	CCNT2	chr19:52831277-52831477	K562	blood:	n/a	n/a
18	CEBPB	chr19:52840123-52840557	IMR90	lung:	n/a	n/a
19	CEBPB	chr19:52900001-52900200	HepG2	liver:	n/a	chr19:52900142-52900153
20	CEBPB	chr19:52900477-52900699	H1-hESC	embryonic stem cell:	n/a	chr19:52900622-52900635 chr19:52900622-52900633
21	CEBPB	chr19:52854850-52855103	H1-hESC	embryonic stem cell:	n/a	n/a
22	CEBPB	chr19:52900506-52900786	HepG2	liver:	n/a	chr19:52900622-52900635 chr19:52900622-52900633
23	CEBPB	chr19:52840199-52840417	H1-hESC	embryonic stem cell:	n/a	n/a
24	CEBPB	chr19:52823946-52824100	A549	lung:	n/a	n/a
25	CEBPB	chr19:52841319-52841464	A549	lung:	n/a	n/a
26	CEBPD	chr19:52831329-52831541	K562	blood:	n/a	n/a
27	CHD1	chr19:52839869-52839873	H1-hESC	embryonic stem cell:	n/a	n/a
28	CHD1	chr19:52900901-52901048	H1-hESC	embryonic stem cell:	n/a	n/a
29	CHD1	chr19:52901004-52901064	GM12878	blood:	n/a	n/a
30	CHD1	chr19:52873085-52873535	GM12878	blood:	n/a	n/a
31	CHD2	chr19:52900929-52901173	HepG2	liver:	n/a	n/a
32	CHD2	chr19:52847017-52847074	GM12878	blood:	n/a	n/a
33	CHD2	chr19:52900605-52900664	GM12878	blood:	n/a	n/a
34	CHD2	chr19:52873042-52873568	GM12878	blood:	n/a	n/a
35	CHD2	chr19:52900941-52901401	GM12878	blood:	n/a	n/a
36	CREB1	chr19:52872963-52873416	GM12878	blood:	n/a	n/a
37	CREB1	chr19:52900793-52901346	HepG2	liver:	n/a	n/a
38	CREB1	chr19:52839220-52839737	HepG2	liver:	n/a	n/a
39	CTCF	chr19:52846783-52847175	GM12878	blood:	n/a	chr19:52846970-52846988 chr19:52846972-52846993
40	CTCF	chr19:52901360-52901510	AG09309	skin:	n/a	n/a
41	CTCF	chr19:52854860-52855010	GM12864	blood:	n/a	n/a
42	CTCF	chr19:52846960-52847110	BJ	skin:	n/a	chr19:52846970-52846988 chr19:52846972-52846993
43	CTCF	chr19:52854920-52855070	A549	lung:	n/a	n/a
44	CTCF	chr19:52846900-52847050	WERI-Rb-1	eye:	n/a	chr19:52846970-52846988 chr19:52846972-52846993
45	CTCF	chr19:52846869-52847077	GM13977	blood:	n/a	chr19:52846970-52846988 chr19:52846972-52846993
46	CTCF	chr19:52846860-52847010	RPTEC	kidney:	n/a	chr19:52846970-52846988 chr19:52846972-52846993
47	CTCF	chr19:52873040-52873190	HEK293	kidney:	n/a	n/a
48	CTCF	chr19:52846920-52847070	NHEK	skin:	n/a	chr19:52846970-52846988 chr19:52846972-52846993
49	CTCF	chr19:52854822-52855082	K562	blood:	n/a	n/a
50	CTCF	chr19:52846916-52847046	MCF-7	breast:	n/a	chr19:52846970-52846988 chr19:52846972-52846993

(count:3239 , 50 per page) page: 1 2 3 4 5 6 7 ... 65

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:52839924-52839974	AG04449	skin:	fetal
2	chr19:52873173-52873223	U87	brain:	n/a
3	chr19:52901271-52901321	HMEC	breast:	n/a
4	chr19:52901639-52901689	CMK	blood:	n/a
5	chr19:52836583-52836633	NHBE	bronchial:	n/a
6	chr19:52847185-52847235	Hela-S3	cervix:	n/a
7	chr19:52839924-52839974	AG04449	skin:	fetal
8	chr19:52873173-52873223	U87	brain:	n/a
9	chr19:52901271-52901321	HMEC	breast:	n/a
10	chr19:52901639-52901689	CMK	blood:	n/a
11	chr19:52836583-52836633	NHBE	bronchial:	n/a
12	chr19:52847185-52847235	Hela-S3	cervix:	n/a
13	chr19:52901307-52901357	AG09309	skin:	n/a
14	chr19:52900914-52900964	GM19239	blood:	n/a
15	chr19:52838590-52838640	ovcar-3	ovarian:	n/a
16	chr19:52900901-52900951	HIPEpiC	eye:	n/a
17	chr19:52901307-52901357	NH-A	brain:	n/a
18	chr19:52900901-52900951	AoSMC	blood vessel:	n/a
19	chr19:52900927-52900977	Caco-2	colon:	n/a
20	chr19:52901431-52901481	PANC-1	pancreas:	n/a
21	chr19:52900927-52900977	HRPEpiC	eye:	n/a
22	chr19:52904218-52904268	NH-A	brain:	n/a
23	chr19:52847943-52847993	PFSK-1	brain:	n/a
24	chr19:52877446-52877496	GM12891	blood:	n/a
25	chr19:52872916-52872966	ovcar-3	ovarian:	n/a
26	chr19:52873101-52873151	GM12892	blood:	n/a
27	chr19:52849695-52849745	Hela-S3	cervix:	n/a
28	chr19:52847933-52847983	HNPCEpiC	eye:	n/a
29	chr19:52839334-52839384	HPAEpiC	pulmonary alveolar:	n/a
30	chr19:52839047-52839097	AG09309	skin:	n/a
31	chr19:52901271-52901321	MCF10A-Er-Src	breast:	n/a
32	chr19:52873019-52873069	HRPEpiC	eye:	n/a
33	chr19:52847185-52847235	HMEC	breast:	n/a
34	chr19:52900980-52901030	BE2_C	brain:	n/a
35	chr19:52901271-52901321	AG04450	lung:	fetal
36	chr19:52905427-52905477	U87	brain:	n/a
37	chr19:52873173-52873223	A549	lung:	n/a
38	chr19:52905427-52905477	K562	blood:	n/a
39	chr19:52873173-52873223	GM19239	blood:	n/a
40	chr19:52873101-52873151	HMEC	breast:	n/a
41	chr19:52836583-52836633	SKMC	muscle:	n/a
42	chr19:52851067-52851117	HRPEpiC	eye:	n/a
43	chr19:52839936-52839986	SK-N-SH	brain:	n/a
44	chr19:52872916-52872966	HL-60	blood:	n/a
45	chr19:52900980-52901030	AG04449	skin:	fetal
46	chr19:52905427-52905477	SK-N-SH	brain:	n/a
47	chr19:52873019-52873069	AoSMC	blood vessel:	n/a
48	chr19:52839738-52839788	NH-A	brain:	n/a
49	chr19:52848664-52848714	IMR90	lung:	fetal
50	chr19:52870301-52870351	T-47D	breast:	n/a

(count:51 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr19:52841087..52844060-chr19:52845758..52847842,2	MCF-7	breast:
2	chr19:52839189..52842101-chr19:52900021..52902093,2	MCF-7	breast:
3	chr19:52799239..52802011-chr19:52817590..52819233,2	MCF-7	breast:
4	chr19:52771473..52773658-chr19:52872286..52874915,2	MCF-7	breast:
5	chr19:52641710..52644473-chr19:52838292..52841252,2	MCF-7	breast:
6	chr19:52861409..52864151-chr19:52865571..52868442,2	MCF-7	breast:
7	chr19:52901728..52903647-chr19:52912630..52914410,2	MCF-7	breast:
8	chr19:52771196..52774040-chr19:52836837..52839956,3	MCF-7	breast:
9	chr19:52861080..52862902-chr19:52863243..52865852,2	K562	blood:
10	chr19:52771349..52773088-chr19:52900874..52902470,2	MCF-7	breast:
11	chr19:52822040..52824431-chr19:52826518..52828994,2	K562	blood:
12	chr19:52829044..52832005-chr19:52837936..52840365,2	MCF-7	breast:
13	chr19:52822040..52824431-chr19:52826518..52828994,2	K562	blood:
14	chr19:52828291..52831274-chr19:52840252..52843029,2	K562	blood:
15	chr19:52823009..52826195-chr19:52826633..52829397,3	K562	blood:
16	chr19:52820318..52821847-chr19:52825066..52827938,2	K562	blood:
17	chr19:52894967..52896731-chr19:52899629..52901485,2	K562	blood:
18	chr19:52800699..52803892-chr19:52837325..52840976,3	MCF-7	breast:
19	chr19:52827319..52831915-chr19:52837582..52840953,5	MCF-7	breast:
20	chr19:52908988..52911904-chr19:52916328..52918022,2	K562	blood:
21	chr19:52875265..52876916-chr19:52889763..52892567,2	MCF-7	breast:
22	chr19:52861080..52862902-chr19:52863243..52865852,2	K562	blood:
23	chr19:52834223..52835955-chr19:52837476..52839580,2	MCF-7	breast:
24	chr19:52893005..52896642-chr19:52900305..52903556,3	MCF-7	breast:
25	chr19:52798639..52802182-chr19:52825182..52828059,3	K562	blood:
26	chr19:52828291..52831274-chr19:52840252..52843029,2	K562	blood:
27	chr19:52771880..52774244-chr19:52838831..52841718,3	MCF-7	breast:
28	chr19:52899758..52902696-chr19:52903314..52905986,3	MCF-7	breast:
29	chr19:52899758..52902696-chr19:52903314..52905986,3	MCF-7	breast:
30	chr19:52875265..52876916-chr19:52889763..52892567,2	MCF-7	breast:
31	chr19:52893005..52896642-chr19:52900305..52903556,3	MCF-7	breast:
32	chr19:52881938..52883510-chr19:52886057..52888201,2	K562	blood:
33	chr19:52839220..52840960-chr19:52842927..52847321,5	MCF-7	breast:
34	chr19:52835793..52838110-chr19:52840085..52841943,2	K562	blood:
35	chr19:52894785..52896519-chr19:52899562..52901653,2	MCF-7	breast:
36	chr19:52847805..52849404-chr19:52851147..52853001,2	MCF-7	breast:
37	chr19:52771765..52773919-chr19:52819713..52821858,2	MCF-7	breast:
38	chr19:52881938..52883510-chr19:52886057..52888201,2	K562	blood:
39	chr19:52838795..52841074-chr19:52850925..52853608,3	MCF-7	breast:
40	chr19:52823009..52826195-chr19:52826633..52829397,3	K562	blood:
41	chr19:52820318..52821847-chr19:52825066..52827938,2	K562	blood:
42	chr19:52839189..52842101-chr19:52900021..52902093,2	MCF-7	breast:
43	chr19:52903104..52905523-chr19:52907320..52908934,2	K562	blood:
44	chr19:52798701..52802396-chr19:52818537..52821732,4	K562	blood:
45	chr19:52839457..52840970-chr19:52859823..52861892,2	MCF-7	breast:
46	chr19:52861409..52864151-chr19:52865571..52868442,2	MCF-7	breast:
47	chr19:52829210..52832192-chr19:52833686..52836622,2	K562	blood:
48	chr19:52829210..52832192-chr19:52833686..52836622,2	K562	blood:
49	chr19:52799399..52802130-chr19:52819718..52821732,2	K562	blood:
50	chr19:52835793..52838110-chr19:52840085..52841943,2	K562	blood:

(count:45 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF83-1	chr19:52899863-52900005	NONHSAT067545
2	lnc-ZNF480-2	chr19:52839557-52839759	NONHSAT067536
3	lnc-ZNF83-1	chr19:52900715-52901019	ENSG00000269834.1
4	lnc-ZNF83-1	chr19:52899892-52900520	ENSG00000269834.1
5	lnc-ZNF880-1	chr19:52901620-52901872	NONHSAT067550
6	lnc-ZNF83-1	chr19:52900715-52901010	ENSG00000246015
7	lnc-ZNF83-1	chr19:52892095-52892698	NONHSAT067540
8	lnc-ZNF83-1	chr19:52900715-52901010	NONHSAT067546
9	lnc-ZNF480-2	chr19:52850346-52850508	NONHSAT067537
10	lnc-ZNF83-1	chr19:52899569-52899752	NONHSAT067545
11	lnc-ZNF880-1	chr19:52904938-52905006	NONHSAT067550
12	lnc-ZNF83-1	chr19:52900715-52901010	NONHSAT067545
13	lnc-ZNF83-1	chr19:52900715-52900922	ENSG00000269834.1
14	lnc-ZNF83-1	chr19:52899863-52900005	ENSG00000246015
15	lnc-ZNF83-1	chr19:52898972-52899003	ENSG00000246015
16	lnc-ZNF880-1	chr19:52905200-52905270	NONHSAT067550
17	lnc-ZNF83-1	chr19:52900715-52901010	ENSG00000269834.1
18	lnc-ZNF83-1	chr19:52899569-52899752	ENSG00000246015
19	lnc-ZNF83-1	chr19:52892095-52896456	ENSG00000246015
20	lnc-ZNF83-1	chr19:52897580-52899003	NONHSAT067544
21	lnc-ZNF83-1	chr19:52898780-52899003	ENSG00000269834.1
22	lnc-ZNF83-1	chr19:52899618-52899752	NONHSAT067544
23	lnc-ZNF83-1	chr19:52900448-52900520	ENSG00000269834.1
24	lnc-ZNF480-2	chr19:52850960-52851465	NONHSAT067537
25	lnc-ZNF83-1	chr19:52899863-52900005	ENSG00000269834.1
26	lnc-ZNF836-4	chr19:52848284-52848482	ENSG00000269535.1
27	lnc-ZNF83-1	chr19:52897584-52899003	ENSG00000246015
28	lnc-ZNF83-1	chr19:52899569-52899752	ENSG00000269834.1
29	lnc-ZNF83-1	chr19:52892272-52892556	ENSG00000269834.1
30	lnc-ZNF83-1	chr19:52892095-52893679	ENSG00000246015
31	lnc-ZNF83-1	chr19:52900715-52901010	NONHSAT067544
32	lnc-ZNF83-1	chr19:52900715-52900985	ENSG00000246015
33	lnc-ZNF836-4	chr19:52829077-52829148	ENSG00000269535.1
34	lnc-ZNF480-2	chr19:52839615-52839759	NONHSAT067537
35	lnc-ZNF83-1	chr19:52899618-52899752	ENSG00000246015
36	lnc-ZNF83-1	chr19:52898044-52898100	ENSG00000269834.1
37	lnc-ZNF83-1	chr19:52897580-52899003	NONHSAT067546
38	lnc-ZNF836-4	chr19:52833583-52833643	ENSG00000269535.1
39	lnc-ZNF480-2	chr19:52850960-52851302	NONHSAT067536
40	lnc-ZNF83-1	chr19:52897580-52899003	NONHSAT067545
41	lnc-ZNF83-1	chr19:52898851-52899003	ENSG00000269834.1
42	lnc-ZNF83-1	chr19:52899863-52900005	ENSG00000269834.1
43	lnc-ZNF83-1	chr19:52892095-52894826	ENSG00000269834.1
44	lnc-ZNF83-1	chr19:52899618-52899752	ENSG00000269834.1
45	lnc-ZNF880-1	chr19:52901153-52901273	NONHSAT067550

No data

Variant related genes	Relation type
ZNF880	TF binding region
ZNF528	TF binding region
ZNF610	TF binding region
ENSG00000269834	TF binding region
ENSG00000269535	TF binding region
ZNF880	CpG island
ZNF528	CpG island
ZNF610	CpG island
ENSG00000269834	CpG island
ENSG00000269535	CpG island
ENSG00000196214	chromatin interactions
ENSG00000269834	chromatin interactions
ENSG00000269535	chromatin interactions
ENSG00000167555	chromatin interactions
ENSG00000198464	chromatin interactions
ENSG00000204611	chromatin interactions
ENSG00000167554	chromatin interactions
ENSG00000269102	chromatin interactions
DLL1	miRNA target sites
TPT1	miRNA target sites
CDC23	miRNA target sites
KIAA0196	miRNA target sites
ULBP2	miRNA target sites
BMP1	miRNA target sites
NASP	miRNA target sites

Extended variants
information (count: 3905 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:3905 , 50 per page) page: 1 2 3 4 5 6 7 ... 79

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs554587315	chr19:52818967-52818968	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs71358870	chr19:52819005-52819006	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs111400488	chr19:52819064-52819065	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs201418843	chr19:52819066-52819067	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs376748413	chr19:52819067-52819068	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs74974072	chr19:52819068-52819069	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs78434406	chr19:52819078-52819079	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs62110453	chr19:52819080-52819081	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs167706	chr19:52819081-52819082	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs376391453	chr19:52819088-52819089	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs146196080	chr19:52819102-52819103	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs139188703	chr19:52819157-52819158	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs577129623	chr19:52819165-52819166	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs372208396	chr19:52819173-52819174	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs35424613	chr19:52819231-52819232	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs372120752	chr19:52819260-52819261	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs568704933	chr19:52819261-52819262	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs557469337	chr19:52819262-52819263	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs373151692	chr19:52819266-52819267	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs575727944	chr19:52819292-52819293	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs373251878	chr19:52819310-52819311	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs193142702	chr19:52819344-52819345	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs561381624	chr19:52819372-52819373	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs200101900	chr19:52819432-52819433	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs375758767	chr19:52819435-52819436	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs150533194	chr19:52819443-52819444	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs150056244	chr19:52819445-52819446	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs368914598	chr19:52819447-52819448	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs377307883	chr19:52819448-52819449	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs573055515	chr19:52819472-52819473	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs56388324	chr19:52819475-52819476	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs75248133	chr19:52819476-52819477	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs528737455	chr19:52819542-52819543	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs540540132	chr19:52819572-52819573	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs146312340	chr19:52819597-52819598	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs532545457	chr19:52819667-52819668	ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs550793969	chr19:52819726-52819727	ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs568847321	chr19:52819734-52819735	ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs321905	chr19:52819735-52819736	ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs139506082	chr19:52819772-52819773	ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs566473306	chr19:52819774-52819775	ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs534048908	chr19:52819775-52819776	ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs12978395	chr19:52819815-52819816	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs184731057	chr19:52819882-52819883	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs150073713	chr19:52819894-52819895	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs189106044	chr19:52819920-52819921	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs575647513	chr19:52819944-52819945	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs539913161	chr19:52819982-52819983	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs536755764	chr19:52819992-52819993	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs554631209	chr19:52820008-52820009	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Adrenocortical carcinoma	18281524	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Lung adenocarcinoma	21935476	CNVD

Chromatin state (count:3213 , 50 per page) page: 1 2 3 4 5 6 7 ... 65

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52801800-52827200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:52801800-52829200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:52802000-52826400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:52802000-52830000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr19:52802200-52827400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
6	chr19:52802200-52828400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:52802200-52829200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr19:52802400-52828800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
9	chr19:52802400-52841800	ZNF genes & repeats	Liver	Liver
10	chr19:52802600-52826800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
11	chr19:52802600-52827600	ZNF genes & repeats	Dnd41	blood
12	chr19:52803800-52829000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
13	chr19:52803800-52829200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr19:52804400-52827200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
15	chr19:52805000-52819000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr19:52805200-52829000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr19:52805400-52829200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr19:52805600-52827800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr19:52807400-52824400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
20	chr19:52807400-52824800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
21	chr19:52807800-52827000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr19:52808000-52824200	ZNF genes & repeats	Fetal Intestine Small	intestine
23	chr19:52808200-52826200	ZNF genes & repeats	Thymus	Thymus
24	chr19:52808200-52827200	ZNF genes & repeats	Left Ventricle	heart
25	chr19:52808200-52831800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
26	chr19:52808400-52826200	ZNF genes & repeats	Placenta	Placenta
27	chr19:52808400-52826600	ZNF genes & repeats	Fetal Muscle Leg	muscle
28	chr19:52808400-52827200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr19:52808600-52824400	ZNF genes & repeats	Fetal Stomach	stomach
30	chr19:52808600-52828000	ZNF genes & repeats	Fetal Lung	lung
31	chr19:52809200-52829800	ZNF genes & repeats	Primary T cells from cord blood	blood
32	chr19:52810600-52826400	ZNF genes & repeats	Fetal Intestine Large	intestine
33	chr19:52811000-52826400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
34	chr19:52813000-52819000	Weak transcription	Osteobl	bone
35	chr19:52813000-52819600	Weak transcription	HUVEC	blood vessel
36	chr19:52814400-52826200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
37	chr19:52814400-52827400	ZNF genes & repeats	Primary B cells from cord blood	blood
38	chr19:52814600-52824200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr19:52814600-52826800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
40	chr19:52814600-52829400	ZNF genes & repeats	Colon Smooth Muscle	Colon
41	chr19:52814600-52836600	ZNF genes & repeats	Adipose Nuclei	Adipose
42	chr19:52814800-52819600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr19:52814800-52822400	Strong transcription	K562	blood
44	chr19:52814800-52826200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr19:52814800-52826600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
46	chr19:52814800-52827800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
47	chr19:52814800-52828000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr19:52814800-52828200	ZNF genes & repeats	A549	lung
49	chr19:52814800-52828400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
50	chr19:52814800-52828800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood

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