Variant report

Variant	esv3401364
Chromosome Location	chr6:102149923-102150762
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 110 )

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6149725	chr6:102149937-102149938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs35852584	chr6:102149938-102149939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs569203366	chr6:102149945-102149946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs2248893	chr6:102149958-102149959	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs548417927	chr6:102149965-102149966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs567708851	chr6:102149993-102149994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs2248984	chr6:102150005-102150006	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs553480420	chr6:102150030-102150031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs375635688	chr6:102150067-102150068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs571544158	chr6:102150070-102150071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs539060912	chr6:102150136-102150137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs557209828	chr6:102150139-102150140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs575555893	chr6:102150151-102150152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs529166206	chr6:102150254-102150255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs542778714	chr6:102150277-102150278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs185454036	chr6:102150299-102150300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs573430129	chr6:102150318-102150319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs539941516	chr6:102150366-102150367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs565025805	chr6:102150403-102150404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs76249494	chr6:102150498-102150499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs544244267	chr6:102150520-102150521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs562734760	chr6:102150544-102150545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs530023049	chr6:102150547-102150548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs548356475	chr6:102150562-102150563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs144704747	chr6:102150571-102150572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs138590886	chr6:102150574-102150575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs2852568	chr6:102150589-102150590	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs566589499	chr6:102150632-102150633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs190027820	chr6:102150714-102150715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs538620157	chr6:102150740-102150741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs556952268	chr6:102150755-102150756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:110)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
small cell lung cancer	20016488	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17170743	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21785460	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Developmental delay	21147756	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Myelofibrosis	22110671	CNVD
Obesity	21045960	CNVD
Liver carcinoma	19366792	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Urothelial carcinoma	21177765	CNVD
Autism	22543975	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102149200-102151200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:102149400-102158000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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