Variant report

Variant	esv3401373
Chromosome Location	chr8:89879211-89881384
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 107 )

Variant overlapped rSNPs/rCNVs (count:62 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs28490485	chr8:89880201-89880202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs376710453	chr8:89880202-89880203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs28374289	chr8:89880203-89880204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs112263901	chr8:89880208-89880209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs71260255	chr8:89880218-89880219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs183630731	chr8:89880222-89880223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs77896528	chr8:89880223-89880224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs75179997	chr8:89880232-89880233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs77513939	chr8:89880233-89880234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs368679412	chr8:89880240-89880241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs373958742	chr8:89880241-89880242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs149141754	chr8:89880242-89880243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs368644415	chr8:89880253-89880254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs71260256	chr8:89880256-89880257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs78858058	chr8:89880262-89880263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs77732214	chr8:89880263-89880264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs371442930	chr8:89880265-89880266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs75373801	chr8:89880270-89880271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs200434753	chr8:89880271-89880272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs563772375	chr8:89880278-89880279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs186858040	chr8:89880331-89880332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs138668449	chr8:89880345-89880346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs2454347	chr8:89880356-89880357	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs191845644	chr8:89880375-89880376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs142697666	chr8:89880385-89880386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs369093455	chr8:89880413-89880414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs144121563	chr8:89880505-89880506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs112300307	chr8:89880509-89880510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs547888788	chr8:89880548-89880549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs116360072	chr8:89880553-89880554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs565605047	chr8:89880594-89880595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs535867742	chr8:89880654-89880655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs373611813	chr8:89880685-89880686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs185151415	chr8:89880703-89880704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs115647742	chr8:89880708-89880709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs117711674	chr8:89880714-89880715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs372714181	chr8:89880728-89880729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs13252743	chr8:89880751-89880752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs190342995	chr8:89880769-89880770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs201631053	chr8:89880775-89880776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs377422142	chr8:89880818-89880819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs536453375	chr8:89880864-89880865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs577348278	chr8:89880893-89880894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs541230202	chr8:89880928-89880929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs553723401	chr8:89880930-89880931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs182026838	chr8:89880958-89880959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs36046669	chr8:89880961-89880962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs542250327	chr8:89880979-89880980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs563663991	chr8:89880984-89880985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs530954827	chr8:89881018-89881019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:107)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
small cell lung cancer	20016488	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Bladder cancer	19088036	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17899364	CNVD
Acute myeloid leukemia	21251322	CNVD
Epilepsy	20502679	CNVD
Breast cancer	20409316	CNVD
Acute myeloid leukemia	19651601	CNVD
head and neck squamous cell carcinoma	19451471	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17170743	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Breast cancer	21611746	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89880200-89885000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links