Variant report

Variant	esv3401480
Chromosome Location	chr5:166854425-166854927
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs530286492	chr5:166854461-166854462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs183229511	chr5:166854471-166854472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs75664911	chr5:166854479-166854480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs201888037	chr5:166854526-166854527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs6893810	chr5:166854527-166854528	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs187665023	chr5:166854533-166854534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs571215512	chr5:166854550-166854551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs71603831	chr5:166854557-166854558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs145494188	chr5:166854624-166854625	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs533587351	chr5:166854625-166854626	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs111645173	chr5:166854630-166854631	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs371010133	chr5:166854646-166854647	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs113376419	chr5:166854677-166854678	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs111161481	chr5:166854692-166854693	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs370268440	chr5:166854731-166854732	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs567044706	chr5:166854741-166854742	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs13185804	chr5:166854771-166854772	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs13185808	chr5:166854780-166854781	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs183252955	chr5:166854801-166854802	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs13185427	chr5:166854815-166854816	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs200947127	chr5:166854822-166854823	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs34196468	chr5:166854855-166854856	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs35629174	chr5:166854858-166854859	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs569559741	chr5:166854865-166854866	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs70976422	chr5:166854886-166854887	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs149050994	chr5:166854900-166854901	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs13185589	chr5:166854902-166854903	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs538914042	chr5:166854905-166854906	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Salivary gland tumor	18059337	CNVD
Renal cell carcinoma	19377443	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Renal cell carcinoma	18592004	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Breast cancer	17603634	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Prostate cancer	18632612	CNVD
Ovarian cancer	21720365	CNVD
Myelofibrosis	22110671	CNVD
severe myoclonic epilepsy of infancy	18294202	CNVD
Olfactory neuroblastoma	18408657	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mental retardation	17124404	CNVD
epilepsy	18472482	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:166854200-166854600	Weak transcription	Hela-S3	cervix
2	chr5:166854600-166856200	Enhancers	Hela-S3	cervix

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