Variant report

Variant	esv3401493
Chromosome Location	chr10:27730971-27733519
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27733427..27735475-chr10:27790214..27792243,2	MCF-7	breast:

Extended variants
information (count: 152 )
Associated
traits (count: 46 )

Variant overlapped rSNPs/rCNVs (count:152 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567039658	chr10:27731010-27731011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs541280752	chr10:27731011-27731012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs183701665	chr10:27731070-27731071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs530354397	chr10:27731103-27731104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs532836336	chr10:27731124-27731125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs374296611	chr10:27731162-27731163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs2532734	chr10:27731176-27731177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs2532735	chr10:27731183-27731184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs552707095	chr10:27731216-27731217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs569331664	chr10:27731221-27731222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs187428711	chr10:27731222-27731223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs377540771	chr10:27731289-27731290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs61852070	chr10:27731390-27731391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs370501513	chr10:27731397-27731398	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs554973270	chr10:27731419-27731420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs574669490	chr10:27731432-27731433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs534075242	chr10:27731463-27731464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs553722308	chr10:27731488-27731489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs202178918	chr10:27731490-27731491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs74937498	chr10:27731499-27731500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs562853959	chr10:27731500-27731501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs2429484	chr10:27731571-27731572	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs11812746	chr10:27731592-27731593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs143435854	chr10:27731604-27731605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs562255074	chr10:27731670-27731671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs140649173	chr10:27731718-27731719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs375512915	chr10:27731719-27731720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs139725613	chr10:27731739-27731740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs147971286	chr10:27731763-27731764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs575699929	chr10:27731773-27731774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs190315204	chr10:27731774-27731775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs112619111	chr10:27731827-27731828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs368951984	chr10:27731836-27731837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs373409666	chr10:27731838-27731839	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs375523751	chr10:27731839-27731840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs61852071	chr10:27731854-27731855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs67073919	chr10:27731884-27731885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs200756155	chr10:27731901-27731902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs530360899	chr10:27731918-27731919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs372823774	chr10:27731920-27731921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs67475231	chr10:27731922-27731923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs375782559	chr10:27731924-27731925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs62636305	chr10:27731941-27731942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs56175138	chr10:27731942-27731943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs182772077	chr10:27731955-27731956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs12776112	chr10:27731964-27731965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs12782086	chr10:27731966-27731967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs151312626	chr10:27731975-27731976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs111218174	chr10:27731979-27731980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs139670812	chr10:27731991-27731992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:46)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	21525872	CNVD
early-passage human iPS cells	21368824	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27730000-27734800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:27730200-27735200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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