Variant report

Variant	esv3402067
Chromosome Location	chr19:22675330-22675817
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF492-3	chr19:22675412-22676132	XLOC_013012

Variant related genes	Relation type
MAP7	miRNA target sites

Extended variants
information (count: 21 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113727675	chr19:22675364-22675365	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs371307760	chr19:22675365-22675366	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs575635900	chr19:22675394-22675395	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs1230313	chr19:22675418-22675419	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs561716285	chr19:22675429-22675430	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
6	rs573900437	chr19:22675444-22675445	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
7	rs35273145	chr19:22675483-22675484	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs181729256	chr19:22675486-22675487	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
9	rs8100702	chr19:22675520-22675521	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs376273566	chr19:22675523-22675524	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
11	rs368097121	chr19:22675631-22675632	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
12	rs551925632	chr19:22675642-22675643	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
13	rs369657290	chr19:22675680-22675681	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
14	rs185112859	chr19:22675684-22675685	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
15	rs372276359	chr19:22675701-22675702	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
16	rs7246876	chr19:22675702-22675703	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs369984466	chr19:22675732-22675733	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
18	rs78955007	chr19:22675736-22675737	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
19	rs1230314	chr19:22675747-22675748	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs546857727	chr19:22675752-22675753	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
21	rs547923811	chr19:22675795-22675796	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:22674600-22675800	ZNF genes & repeats	Pancreas	Pancrea
2	chr19:22674800-22679600	ZNF genes & repeats	Aorta	Aorta
3	chr19:22674800-22698000	ZNF genes & repeats	Ovary	ovary
4	chr19:22675000-22699400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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