Variant report

Variant	esv3403855
Chromosome Location	chr6:68800531-68801529
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:68795630..68800663-chr6:68801094..68806773,6	K562	blood:
2	chr6:68798322..68801928-chr6:68802976..68805432,3	MCF-7	breast:
3	chr6:68587589..68589412-chr6:68801238..68803504,2	K562	blood:
4	chr6:68795630..68800663-chr6:68801094..68806773,6	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BAI3-2	chr6:68801513-68803739	NONHSAT113395

Extended variants
information (count: 44 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs374213254	chr6:68800604-68800605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs182497589	chr6:68800651-68800652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs72896394	chr6:68800734-68800735	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs143235395	chr6:68800740-68800741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs539861543	chr6:68800749-68800750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs11752887	chr6:68800783-68800784	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs561154911	chr6:68800799-68800800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs201655017	chr6:68800803-68800804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs530103364	chr6:68800804-68800805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs376964530	chr6:68800805-68800806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs112472640	chr6:68800806-68800807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs533061215	chr6:68800807-68800808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs9454425	chr6:68800808-68800809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs376700358	chr6:68800810-68800811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs143701242	chr6:68800824-68800825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs576635999	chr6:68800833-68800834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs398049069	chr6:68800835-68800836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs61368407	chr6:68800837-68800838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs9354668	chr6:68800839-68800840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs2061116	chr6:68800874-68800875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs7740369	chr6:68800911-68800912	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs34622257	chr6:68800938-68800939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs552327133	chr6:68800939-68800940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs367891162	chr6:68800941-68800942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs373091457	chr6:68800942-68800943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs191646772	chr6:68800967-68800968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs375996009	chr6:68801013-68801014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs541770764	chr6:68801040-68801041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs528814794	chr6:68801101-68801102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs548840308	chr6:68801115-68801116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs568008683	chr6:68801203-68801204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs537032888	chr6:68801208-68801209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs371315301	chr6:68801213-68801214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs570515877	chr6:68801242-68801243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs539666042	chr6:68801268-68801269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs371967659	chr6:68801309-68801310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs148309003	chr6:68801314-68801315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs543300214	chr6:68801323-68801324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs555627985	chr6:68801330-68801331	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs556019868	chr6:68801408-68801409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs574752647	chr6:68801457-68801458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs71555379	chr6:68801473-68801474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs183940104	chr6:68801476-68801477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs563465513	chr6:68801480-68801481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:68798600-68803400	Weak transcription	GM12878-XiMat	blood
2	chr6:68799600-68807400	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links