Variant report

Variant	esv3404382
Chromosome Location	chr10:96923062-96927260
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs186168331	chr10:96923074-96923075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs190641480	chr10:96923161-96923162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs563628362	chr10:96923192-96923193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs560902820	chr10:96926411-96926412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs571718446	chr10:96926440-96926441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs149483768	chr10:96926479-96926480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs543591006	chr10:96926492-96926493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs563228169	chr10:96926535-96926536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs183584690	chr10:96926553-96926554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs551654180	chr10:96926592-96926593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs565587952	chr10:96926636-96926637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs528011491	chr10:96926751-96926752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs112996052	chr10:96926758-96926759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs567367714	chr10:96926814-96926815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs36187277	chr10:96926857-96926858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs536235115	chr10:96926859-96926860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs188955182	chr10:96926915-96926916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570001730	chr10:96926918-96926919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs7090961	chr10:96926921-96926922	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs558436464	chr10:96926926-96926927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs572190874	chr10:96926973-96926974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs815267	chr10:96926983-96926984	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs554900214	chr10:96927011-96927012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs574527785	chr10:96927013-96927014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs192448042	chr10:96927056-96927057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs815268	chr10:96927060-96927061	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs568168300	chr10:96927079-96927080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs576829513	chr10:96927112-96927113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs552589177	chr10:96927181-96927182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs566471270	chr10:96927189-96927190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs545867597	chr10:96927190-96927191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs182224223	chr10:96927218-96927219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs527876048	chr10:96927228-96927229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs541363641	chr10:96927250-96927251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96918800-96923200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:96926400-96937400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:96927000-96931800	Weak transcription	Aorta	Aorta
4	chr10:96927200-96935400	Weak transcription	Fetal Intestine Small	intestine

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