Variant report

Variant	esv3404453
Chromosome Location	chr6:1609978-1612826
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:382)
CpG islands
(count:733)
Chromatin interactive
region (count:34)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:382 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr6:1610104-1610166	H1-hESC	embryonic stem cell:	n/a	n/a
2	BRCA1	chr6:1609984-1610210	Hela-S3	cervix:	n/a	n/a
3	BRCA1	chr6:1611004-1611154	Hela-S3	cervix:	n/a	n/a
4	CCNT2	chr6:1612051-1612251	K562	blood:	n/a	n/a
5	CEBPB	chr6:1612221-1612392	Hela-S3	cervix:	n/a	n/a
6	CEBPB	chr6:1609988-1610319	Hela-S3	cervix:	n/a	n/a
7	CHD2	chr6:1610670-1611178	Hela-S3	cervix:	n/a	n/a
8	CHD2	chr6:1611590-1611790	Hela-S3	cervix:	n/a	n/a
9	CHD2	chr6:1609365-1610382	Hela-S3	cervix:	n/a	n/a
10	CHD2	chr6:1612123-1612307	Hela-S3	cervix:	n/a	n/a
11	CHD2	chr6:1612215-1612260	HepG2	liver:	n/a	n/a
12	CREB1	chr6:1609942-1610297	A549	lung:	n/a	n/a
13	CREB1	chr6:1611688-1611937	A549	lung:	n/a	n/a
14	CTBP2	chr6:1610771-1611766	H1-hESC	embryonic stem cell:	n/a	n/a
15	CTCF	chr6:1611696-1611840	Hela-S3	cervix:	n/a	n/a
16	CTCF	chr6:1611666-1611815	SK-N-SH_RA	brain:	n/a	n/a
17	CTCF	chr6:1611734-1611805	Kidney_OC	kidney:	n/a	n/a
18	CTCF	chr6:1611640-1611790	AG09319	gingival:	n/a	n/a
19	CTCF	chr6:1611620-1611770	HUVEC	blood vessel:	n/a	n/a
20	CTCF	chr6:1611640-1611790	HCFaa	heart:	n/a	n/a
21	CTCF	chr6:1611582-1611898	H1-hESC	embryonic stem cell:	n/a	n/a
22	CTCF	chr6:1612240-1612390	HEK293	kidney:	n/a	n/a
23	CTCF	chr6:1611680-1611830	NB4	blood:	n/a	n/a
24	CTCF	chr6:1611687-1611874	H1-hESC	embryonic stem cell:	n/a	n/a
25	CTCF	chr6:1611640-1611790	GM12874	blood:	n/a	n/a
26	CTCF	chr6:1611636-1611856	A549	lung:	n/a	n/a
27	CTCF	chr6:1611640-1611790	AG10803	skin:	n/a	n/a
28	CTCF	chr6:1611680-1611830	GM19240	blood:	n/a	n/a
29	CTCF	chr6:1611689-1611828	Pancreas_OC	pancreas:	n/a	n/a
30	CTCF	chr6:1611720-1611870	HBMEC	blood vessel:	n/a	n/a
31	CTCF	chr6:1611660-1611810	BJ	skin:	n/a	n/a
32	CTCF	chr6:1611594-1611840	HepG2	liver:	n/a	n/a
33	CTCF	chr6:1611660-1611810	GM12873	blood:	n/a	n/a
34	CTCF	chr6:1611640-1611790	HPAF	blood vessel:	n/a	n/a
35	CTCF	chr6:1611640-1611790	AoAF	blood vessel:	n/a	n/a
36	CTCF	chr6:1611660-1611810	HAc	cerebellar:	n/a	n/a
37	CTCF	chr6:1611660-1611810	WERI-Rb-1	eye:	n/a	n/a
38	CTCF	chr6:1611700-1611850	AoAF	blood vessel:	n/a	n/a
39	CTCF	chr6:1611640-1611790	HEK293	kidney:	n/a	n/a
40	CTCF	chr6:1611683-1611836	Medullo	brain:	n/a	n/a
41	CTCF	chr6:1611714-1611793	MCF-7	breast:	n/a	n/a
42	CTCF	chr6:1611660-1611810	A549	lung:	n/a	n/a
43	CTCF	chr6:1611660-1611810	GM12875	blood:	n/a	n/a
44	CTCF	chr6:1611640-1611790	SAEC	small airway:	n/a	n/a
45	CTCF	chr6:1611698-1611864	MCF-7	breast:	n/a	n/a
46	CTCF	chr6:1611660-1611810	HepG2	liver:	n/a	n/a
47	CTCF	chr6:1611660-1611810	AG04449	skin:	n/a	n/a
48	CTCF	chr6:1611678-1611820	GM12891	blood:	n/a	n/a
49	CTCF	chr6:1611700-1611850	HFF-Myc	foreskin:	n/a	n/a
50	CTCF	chr6:1611660-1611810	AG09319	gingival:	n/a	n/a

(count:733 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:1611850-1611900	NB4	blood:	n/a
2	chr6:1611850-1611900	NB4	blood:	n/a
3	chr6:1610673-1610723	SK-N-SH	brain:	n/a
4	chr6:1610102-1610152	HMEC	breast:	n/a
5	chr6:1610688-1610738	K562	blood:	n/a
6	chr6:1610688-1610738	Caco-2	colon:	n/a
7	chr6:1611745-1611795	CMK	blood:	n/a
8	chr6:1611850-1611900	GM12891	blood:	n/a
9	chr6:1612301-1612351	AG04450	lung:	fetal
10	chr6:1610673-1610723	HIPEpiC	eye:	n/a
11	chr6:1611451-1611501	SK-N-SH	brain:	n/a
12	chr6:1610120-1610170	H1-hESC	embryonic stem cell:	embryo
13	chr6:1610669-1610719	ovcar-3	ovarian:	n/a
14	chr6:1611745-1611795	HMEC	breast:	n/a
15	chr6:1610120-1610170	HCPEpiC	choroid plexus:	n/a
16	chr6:1610669-1610719	HEK293	kidney:	embryo
17	chr6:1611745-1611795	GM19239	blood:	n/a
18	chr6:1610688-1610738	AG04450	lung:	fetal
19	chr6:1610120-1610170	SKMC	muscle:	n/a
20	chr6:1610197-1610247	IMR90	lung:	fetal
21	chr6:1612301-1612351	NHDF-neo	bronchial:	n/a
22	chr6:1610102-1610152	AG09309	skin:	n/a
23	chr6:1610688-1610738	PrEC	prostate:	n/a
24	chr6:1611745-1611795	BJ	skin:	n/a
25	chr6:1610102-1610152	MCF-7	breast:	n/a
26	chr6:1610688-1610738	HCF	heart:	n/a
27	chr6:1611850-1611900	ECC-1	luminal epithelium:	n/a
28	chr6:1612301-1612351	IMR90	lung:	fetal
29	chr6:1611712-1611762	ProgFib	skin:	n/a
30	chr6:1612301-1612351	HRPEpiC	eye:	n/a
31	chr6:1611850-1611900	HPAEpiC	pulmonary alveolar:	n/a
32	chr6:1612589-1612639	PFSK-1	brain:	n/a
33	chr6:1610688-1610738	MCF-7	breast:	n/a
34	chr6:1610669-1610719	ProgFib	skin:	n/a
35	chr6:1610102-1610152	HEK293	kidney:	embryo
36	chr6:1610688-1610738	SAEC	small airway:	n/a
37	chr6:1611712-1611762	GM06990	blood:	n/a
38	chr6:1610669-1610719	AG04450	lung:	fetal
39	chr6:1610102-1610152	GM19239	blood:	n/a
40	chr6:1610102-1610152	T-47D	breast:	n/a
41	chr6:1612589-1612639	SK-N-SH	brain:	n/a
42	chr6:1611850-1611900	SK-N-SH_RA	brain:	n/a
43	chr6:1610669-1610719	SK-N-SH	brain:	n/a
44	chr6:1611451-1611501	AG10803	skin:	n/a
45	chr6:1610673-1610723	NT2-D1	testis:	n/a
46	chr6:1612301-1612351	RPTEC	kidney:	n/a
47	chr6:1610669-1610719	LNCaP	prostate:	n/a
48	chr6:1612589-1612639	BJ	skin:	n/a
49	chr6:1611850-1611900	MCF-7	breast:	n/a
50	chr6:1611850-1611900	NH-A	brain:	n/a

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:1609895..1610404-chr7:148822727..148823549,2	HCT-116	colon:
2	chr11:67887768..67889272-chr6:1609533..1611427,2	MCF-7	breast:
3	chr6:1612494..1615565-chr6:2103145..2107069,5	MCF-7	breast:
4	chr6:1612565..1615275-chr6:1837590..1839107,2	MCF-7	breast:
5	chr1:161101985..161102784-chr6:1609809..1610325,2	Hela-S3	cervix:
6	chr6:1612582..1614145-chr6:1846859..1849142,2	MCF-7	breast:
7	chr6:1609667..1610499-chr6:2634221..2635016,2	Hela-S3	cervix:
8	chr6:1610083..1610592-chr8:77593010..77593516,2	HCT-116	colon:
9	chr6:1612577..1614591-chr6:1838798..1840944,2	MCF-7	breast:
10	chr15:72523069..72523704-chr6:1609701..1610266,2	HCT-116	colon:
11	chr6:1611913..1614321-chr6:1833472..1836057,3	MCF-7	breast:
12	chr19:39900304..39901200-chr6:1610096..1610828,2	Hela-S3	cervix:
13	chr21:27542375..27543109-chr6:1610318..1611312,2	Hela-S3	cervix:
14	chr6:1612762..1614490-chr6:1684651..1686337,2	MCF-7	breast:
15	chr6:1608295..1609995-chr6:2876542..2878231,2	MCF-7	breast:
16	chr19:572126..572770-chr6:1609596..1610352,2	NB4	blood:
17	chr6:1609450..1612431-chr6:1929248..1931252,2	MCF-7	breast:
18	chr6:1608640..1610320-chr6:2764921..2767231,2	MCF-7	breast:
19	chr14:100658739..100659418-chr6:1609951..1610630,2	Hela-S3	cervix:
20	chr6:1609612..1610158-chr7:22862032..22862665,2	NB4	blood:
21	chr6:1612605..1614594-chr6:1617750..1620318,2	K562	blood:
22	chr6:1607774..1610426-chr6:2098410..2101344,2	MCF-7	breast:
23	chr6:1612642..1614747-chr6:1828037..1830665,2	MCF-7	breast:
24	chr6:1608353..1611335-chr6:2245492..2248463,2	MCF-7	breast:
25	chr5:112257084..112257659-chr6:1609600..1610235,2	Hela-S3	cervix:
26	chr6:1611214..1613001-chr6:2041317..2043810,2	MCF-7	breast:
27	chr12:52445575..52446281-chr6:1609760..1610319,2	Hela-S3	cervix:
28	chr17:41438452..41439029-chr6:1609999..1610656,2	Hela-S3	cervix:
29	chr6:1608029..1610545-chr6:1915416..1919377,4	MCF-7	breast:
30	chr6:1607577..1610037-chr6:2107747..2109346,3	MCF-7	breast:
31	chr17:73775605..73776125-chr6:1609591..1610356,2	Hela-S3	cervix:
32	chr6:1610715..1613985-chr6:2196585..2199138,3	MCF-7	breast:
33	chr1:183441719..183444081-chr6:1612481..1614965,2	MCF-7	breast:
34	chr5:38845752..38846390-chr6:1609592..1610231,2	Hela-S3	cervix:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOXC1-3	chr6:1612577-1614127	NONHSAT106538
2	lnc-GMDS-6	chr6:1612000-1612105	NONHSAT106529
3	lnc-GMDS-6	chr6:1610339-1610832	NONHSAT106529

No data

Variant related genes	Relation type
FOXC1	TF binding region
FOXC1	CpG island
ENSG00000197024	chromatin interactions
ENSG00000267751	chromatin interactions
ENSG00000142192	chromatin interactions
ENSG00000196683	chromatin interactions
ENSG00000240877	chromatin interactions
ENSG00000250903	chromatin interactions
ENSG00000116698	chromatin interactions
ENSG00000067225	chromatin interactions
ENSG00000204947	chromatin interactions
ENSG00000249740	chromatin interactions
ENSG00000132475	chromatin interactions
ENSG00000164385	chromatin interactions
ENSG00000230438	chromatin interactions
ENSG00000145623	chromatin interactions
ENSG00000124535	chromatin interactions
ENSG00000110721	chromatin interactions
ENSG00000172270	chromatin interactions
ENSG00000158796	chromatin interactions
ENSG00000091656	chromatin interactions
ENSG00000266559	chromatin interactions
ENSG00000129625	chromatin interactions
ENSG00000112699	chromatin interactions

Extended variants
information (count: 127 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:127 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562489902	chr6:1610000-1610001	Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	TF binding region Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
2	rs188900006	chr6:1610096-1610097	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
3	rs576654054	chr6:1610126-1610127	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
4	rs542194378	chr6:1610128-1610129	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
5	rs562299457	chr6:1610132-1610133	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
6	rs527925646	chr6:1610198-1610199	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
7	rs547972230	chr6:1610209-1610210	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
8	rs562673925	chr6:1610251-1610252	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
9	rs77888940	chr6:1610252-1610253	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
10	rs72556526	chr6:1610254-1610255	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
11	rs193116463	chr6:1610256-1610257	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
12	rs199722397	chr6:1610265-1610266	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
13	rs35342888	chr6:1610297-1610298	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
14	rs34503337	chr6:1610300-1610301	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
15	rs7755359	chr6:1610341-1610342	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	14 gene(s)	Overlapped CNVs	n/a
16	rs533266244	chr6:1610378-1610379	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
17	rs185790394	chr6:1610437-1610438	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	Overlapped CNVs	n/a
18	rs371998828	chr6:1610481-1610482	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	Overlapped CNVs	n/a
19	rs76225423	chr6:1610622-1610623	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
20	rs80204039	chr6:1610630-1610631	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
21	rs104893952	chr6:1610747-1610748	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
22	rs545478008	chr6:1610758-1610759	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
23	rs538126253	chr6:1610794-1610795	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
24	rs372857241	chr6:1610821-1610822	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
25	rs112885689	chr6:1610824-1610825	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
26	rs548226336	chr6:1610830-1610831	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
27	rs374448293	chr6:1610839-1610840	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
28	rs188085399	chr6:1610851-1610852	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
29	rs375581157	chr6:1610869-1610870	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs368260972	chr6:1610872-1610873	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs150084174	chr6:1610875-1610876	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
32	rs533710669	chr6:1610878-1610879	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs35168188	chr6:1610884-1610885	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
34	rs35974174	chr6:1610887-1610888	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs200040370	chr6:1610896-1610897	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs104893953	chr6:1610925-1610926	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs376405759	chr6:1610926-1610927	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs527271139	chr6:1610929-1610930	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs104893954	chr6:1610941-1610942	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs141798688	chr6:1610959-1610960	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs369078747	chr6:1610963-1610964	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs201891353	chr6:1610995-1610996	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs201072263	chr6:1611001-1611002	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs575996895	chr6:1611002-1611003	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs146275363	chr6:1611010-1611011	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs547414473	chr6:1611013-1611014	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs104893951	chr6:1611015-1611016	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs121909339	chr6:1611038-1611039	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
49	rs562544227	chr6:1611056-1611057	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
50	rs104893958	chr6:1611058-1611059	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Prader-willi syndrome	20588305	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Developmental delay	19490664	CNVD
Cancer	21183584	CNVD
Multiple Epiphyseal Dysplasia	20877625	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Glaucoma	18694899	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	17603634	CNVD
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Lung cancer	18438408	CNVD
Bladder cancer	21909424	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Cancer	20164919	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
small cell lung cancer	20016488	CNVD
Autism	22495311	CNVD
Autism	21448237	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:474 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:1604200-1610800	Active TSS	Aorta	Aorta
2	chr6:1604400-1610800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:1605000-1610800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr6:1605600-1620800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:1607000-1612600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr6:1607200-1610000	Bivalent Enhancer	Fetal Brain Male	brain
7	chr6:1607800-1611200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr6:1607800-1611200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
9	chr6:1607800-1612000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
10	chr6:1608400-1612000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
11	chr6:1608600-1610600	Bivalent/Poised TSS	Thymus	Thymus
12	chr6:1608600-1611000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
13	chr6:1608600-1611200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr6:1608600-1611200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
15	chr6:1608800-1610200	Enhancers	Liver	Liver
16	chr6:1609000-1612000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:1609000-1612000	Active TSS	Ovary	ovary
18	chr6:1609000-1612200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:1609000-1615200	Active TSS	Right Atrium	heart
20	chr6:1609000-1615400	Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr6:1609200-1610000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
22	chr6:1609200-1610800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
23	chr6:1609200-1611400	Bivalent/Poised TSS	Psoas Muscle	Psoas
24	chr6:1609200-1612200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:1609200-1612400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:1609200-1612800	Active TSS	HSMM	muscle
27	chr6:1609200-1614400	Active TSS	A549	lung
28	chr6:1609400-1610000	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
29	chr6:1609400-1610000	Flanking Active TSS	Spleen	Spleen
30	chr6:1609400-1611200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr6:1609400-1612200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:1609400-1612400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
33	chr6:1609400-1612600	Active TSS	HSMMtube	muscle
34	chr6:1609400-1616000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:1609600-1610000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:1609600-1610000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
37	chr6:1609600-1610000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:1609600-1610000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
39	chr6:1609600-1610000	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr6:1609600-1610200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:1609600-1610600	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
42	chr6:1609600-1610800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:1609600-1610800	Active TSS	Left Ventricle	heart
44	chr6:1609600-1611200	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:1609600-1611200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
46	chr6:1609600-1611200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:1609600-1612200	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr6:1609600-1612400	Active TSS	NHEK	skin
49	chr6:1609600-1614400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:1609600-1614800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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