Variant report

Variant	esv3404522
Chromosome Location	chr5:27573620-27576168
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C5orf17-9	chr5:27574964-27575000	XLOC_004324

Extended variants
information (count: 25 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs371818181	chr5:27573649-27573650	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs35244356	chr5:27573680-27573681	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs573717768	chr5:27573690-27573691	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs537829727	chr5:27573703-27573704	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs189427738	chr5:27573704-27573705	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs78228578	chr5:27573827-27573828	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs116494356	chr5:27573833-27573834	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs559927387	chr5:27573856-27573857	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs140087172	chr5:27573874-27573875	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs144043437	chr5:27573901-27573902	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs79284929	chr5:27573910-27573911	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs149605726	chr5:27573926-27573927	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs529305225	chr5:27573947-27573948	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs550973109	chr5:27574034-27574035	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs34822219	chr5:27574054-27574055	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs533476307	chr5:27574063-27574064	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs13169053	chr5:27574070-27574071	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs181540423	chr5:27574077-27574078	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs577197002	chr5:27574080-27574081	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs35193575	chr5:27574129-27574130	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs151139956	chr5:27574130-27574131	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs397951186	chr5:27574131-27574132	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs527875788	chr5:27574192-27574193	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs549731069	chr5:27574197-27574198	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs576109927	chr5:27574985-27574986	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Salivary gland tumor	18059337	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Kartagener syndrome	16639409	CNVD
Medulloblastoma	21979893	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Cervical squamous cell carcinoma	21590768	CNVD
Non-small cell lung cancer	20864512	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Multiple myeloma	17550852	CNVD
prenatal diagnosis	22389664	CNVD
Bladder cancer	21909424	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Breast cancer	21858162	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Cancer	16751803	CNVD
Breast cancer	16608533	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Intellectual disability	22102821	CNVD
Lung cancer	16740712	CNVD
Renal cell carcinoma	18194544	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Non-small cell lung cancer	19010865	CNVD
Glioblastoma multiforme	22286061	CNVD
Compulsive disorder	18923513	CNVD
Epilepsy	18923513	CNVD
Prader-willi syndrome	18923513	CNVD
small cell lung cancer	20016488	CNVD
Ovarian cancer	21720365	CNVD
Lung cancer	18438408	CNVD
Glioma	20126413	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	22032731	CNVD
Esophageal cancer	20955586	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:27573400-27574200	Enhancers	Dnd41	blood

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