Variant report

Variant	esv3404799
Chromosome Location	chr21:45903549-45906097
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr21:45905146-45905376	K562	blood:	n/a	n/a
2	ATF2	chr21:45905026-45905646	H1-hESC	embryonic stem cell:	n/a	n/a
3	ATF2	chr21:45905039-45905445	H1-hESC	embryonic stem cell:	n/a	n/a
4	BHLHE40	chr21:45905222-45905303	K562	blood:	n/a	n/a
5	CEBPB	chr21:45905083-45905402	H1-hESC	embryonic stem cell:	n/a	n/a
6	CHD1	chr21:45905378-45905917	H1-hESC	embryonic stem cell:	n/a	n/a
7	CHD2	chr21:45903589-45903753	HepG2	liver:	n/a	n/a
8	CHD2	chr21:45905150-45905344	HepG2	liver:	n/a	n/a
9	CHD2	chr21:45905059-45905361	K562	blood:	n/a	n/a
10	CHD2	chr21:45905031-45905636	H1-hESC	embryonic stem cell:	n/a	n/a
11	CREB1	chr21:45905268-45905591	A549	lung:	n/a	n/a
12	CREB1	chr21:45902389-45904220	HepG2	liver:	n/a	n/a
13	CTCF	chr21:45905020-45905170	BE2_C	brain:	n/a	n/a
14	CTCF	chr21:45905030-45905369	A549	lung:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
15	CTCF	chr21:45905080-45905230	AG09309	skin:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
16	CTCF	chr21:45905128-45905314	GM10248	blood:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
17	CTCF	chr21:45904880-45905030	K562	blood:	n/a	n/a
18	CTCF	chr21:45905186-45905235	Kidney_OC	kidney:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
19	CTCF	chr21:45905007-45905304	A549	lung:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
20	CTCF	chr21:45904985-45905339	H1-hESC	embryonic stem cell:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
21	CTCF	chr21:45905027-45905400	K562	blood:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
22	CTCF	chr21:45905120-45905270	AG09319	gingival:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
23	CTCF	chr21:45905140-45905290	HEK293	kidney:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
24	CTCF	chr21:45905124-45905292	HUVEC	blood vessel:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
25	CTCF	chr21:45905165-45905255	NHEK	skin:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
26	CTCF	chr21:45905080-45905230	HVMF	connective:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
27	CTCF	chr21:45904960-45905110	HVMF	connective:	n/a	n/a
28	CTCF	chr21:45905120-45905270	GM12867	blood:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
29	CTCF	chr21:45905120-45905270	HPF	lung:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
30	CTCF	chr21:45905031-45905335	SK-N-SH_RA	brain:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
31	CTCF	chr21:45905214-45905222	Pancreas_OC	pancreas:	n/a	n/a
32	CTCF	chr21:45904880-45905030	HVMF	connective:	n/a	n/a
33	CTCF	chr21:45905100-45905250	AoAF	blood vessel:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
34	CTCF	chr21:45905120-45905270	GM12875	blood:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
35	CTCF	chr21:45905060-45905210	HRPEpiC	eye:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
36	CTCF	chr21:45905060-45905210	HA-sp	spinal cord:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
37	CTCF	chr21:45905092-45905357	A549	lung:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
38	CTCF	chr21:45905150-45905296	MCF-7	breast:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
39	CTCF	chr21:45905080-45905230	AG04450	lung:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
40	CTCF	chr21:45905140-45905290	HRPEpiC	eye:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
41	CTCF	chr21:45905080-45905230	HCT-116	colon:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
42	CTCF	chr21:45905500-45905650	SK-N-SH_RA	brain:	n/a	n/a
43	CTCF	chr21:45905180-45905330	HPF	lung:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
44	CTCF	chr21:45905060-45905210	GM12871	blood:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
45	CTCF	chr21:45905097-45905354	H1-hESC	embryonic stem cell:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
46	CTCF	chr21:45905058-45905243	A549	lung:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
47	CTCF	chr21:45905080-45905230	AoAF	blood vessel:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
48	CTCF	chr21:45905066-45905363	K562	blood:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
49	CTCF	chr21:45905080-45905230	A549	lung:	n/a	chr21:45905188-45905206 chr21:45905189-45905205
50	CTCF	chr21:45905114-45905355	GM19239	blood:	n/a	chr21:45905188-45905206 chr21:45905189-45905205

No.	Distal block	Cell Line	Cell type
1	chr21:45759118..45760920-chr21:45902719..45905047,2	MCF-7	breast:
2	chr21:45758316..45760568-chr21:45903461..45906076,2	MCF-7	breast:
3	chr21:45900988..45903859-chr21:46349141..46351418,2	MCF-7	breast:
4	chr21:45758851..45761192-chr21:45902340..45905536,3	K562	blood:
5	chr21:45905868..45907578-chr21:46240496..46242148,2	MCF-7	breast:
6	chr21:45662446..45664337-chr21:45902333..45904974,2	MCF-7	breast:
7	chr21:45902648..45905236-chr21:45906362..45908752,2	K562	blood:
8	chr21:45896261..45898915-chr21:45903489..45905136,2	K562	blood:
9	chr21:45898990..45900999-chr21:45903526..45905351,2	MCF-7	breast:
10	chr21:45902107..45904148-chr21:45905322..45907862,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C21orf90-3	chr21:45904317-45904707	NONHSAT082600
2	lnc-C21orf90-3	chr21:45904317-45904480	NONHSAT082602

Variant related genes	Relation type
ENSG00000228709	TF binding region
ENSG00000228709	chromatin interactions
ENSG00000160226	chromatin interactions
ENSG00000273027	chromatin interactions
ENSG00000232969	chromatin interactions

Extended variants
information (count: 122 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:122 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs143263584	chr21:45903568-45903569	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
2	rs373453620	chr21:45903580-45903581	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
3	rs116216736	chr21:45903601-45903602	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
4	rs570254054	chr21:45903694-45903695	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
5	rs376719465	chr21:45903703-45903704	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
6	rs73377669	chr21:45903707-45903708	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
7	rs148176951	chr21:45903750-45903751	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
8	rs531544727	chr21:45903762-45903763	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs142018287	chr21:45903773-45903774	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs79703434	chr21:45903817-45903818	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs200107638	chr21:45903854-45903855	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs150711681	chr21:45903915-45903916	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs139097123	chr21:45903939-45903940	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs148478412	chr21:45903954-45903955	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs184878473	chr21:45903958-45903959	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs9306105	chr21:45903981-45903982	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs575833472	chr21:45903987-45903988	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs543561364	chr21:45904024-45904025	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs9981810	chr21:45904049-45904050	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs189348286	chr21:45904079-45904080	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs568719042	chr21:45904086-45904087	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs540697776	chr21:45904111-45904112	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs559374883	chr21:45904112-45904113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs533100450	chr21:45904143-45904144	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs142415409	chr21:45904211-45904212	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs569722815	chr21:45904235-45904236	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs531022536	chr21:45904241-45904242	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs76573909	chr21:45904292-45904293	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs567888953	chr21:45904300-45904301	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs535308075	chr21:45904307-45904308	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs180671009	chr21:45904330-45904331	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
32	rs571302321	chr21:45904339-45904340	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
33	rs77839811	chr21:45904340-45904341	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
34	rs557042273	chr21:45904410-45904411	Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
35	rs13048314	chr21:45904437-45904438	Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs377532977	chr21:45904496-45904497	Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
37	rs233311	chr21:45904501-45904502	Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs555515722	chr21:45904558-45904559	Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
39	rs573886124	chr21:45904567-45904568	Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
40	rs555384853	chr21:45904596-45904597	Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
41	rs386819158	chr21:45904633-45904634	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
42	rs73910010	chr21:45904635-45904636	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs551422741	chr21:45904681-45904682	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
44	rs587625505	chr21:45904698-45904699	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
45	rs587743622	chr21:45904706-45904707	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
46	rs4530445	chr21:45904707-45904708	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
47	rs186033564	chr21:45904708-45904709	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs587593993	chr21:45904714-45904715	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs587670513	chr21:45904716-45904717	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs4356745	chr21:45904725-45904726	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Down syndrome	17412756	CNVD
Down syndrome	17576883	CNVD
Acute promyelocytic leukemia	19109227	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
Renal cell carcinoma	19461508	CNVD
Seminomas	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	19156837	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
lymphocytic leukemia	21291569	CNVD
Melanoma	18172304	CNVD
Autism	22958593	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Wilms tumour	21544195	CNVD
Ewing''s sarcoma	17952124	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute myeloid leukemia	16864856	CNVD
Mental retardation	21031080	CNVD
Polymicrogyria	21031080	CNVD
periventricular nodular heterotopia	21031080	CNVD
Myelodysplastic syndrome	21606161	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Autism	18414403	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Breast cancer	21858162	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	17899364	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Prostate cancer	20473283	CNVD
Chordoma	18071362	CNVD
Glioblastoma multiforme	18628472	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	17457615	CNVD
Ewing''s sarcoma	21437220	CNVD
Lung adenocarcinoma	17086460	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian neoplasms	16753589	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute myeloid leukemia	21358987	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Prostate cancer	23341502	CNVD
Ovarian cancer	21720365	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	21251322	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Cholangiocarcinoma	16830362	CNVD
Down syndrome	17334655	CNVD
Neuroticism	17667963	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Autoimmune polyendocrine syndrome	18200029	CNVD
Prostate cancer	19363497	CNVD
Lung cancer	17086460	CNVD
Olfactory neuroblastoma	18408657	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Multiple myeloma	16616336	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21509527	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	17142309	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute myeloid leukemia	20729466	CNVD
Ewing''s sarcoma	18628472	CNVD
Leukemia	18628472	CNVD
small cell lung cancer	17426248	CNVD
Developmental delay	21147756	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:145 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:45881800-45911800	Weak transcription	Right Atrium	heart
2	chr21:45896200-45905400	Weak transcription	Brain Germinal Matrix	brain
3	chr21:45898600-45905600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr21:45898800-45905400	Weak transcription	Fetal Brain Female	brain
5	chr21:45898800-45906200	Weak transcription	Spleen	Spleen
6	chr21:45899000-45903800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr21:45900800-45905000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr21:45901000-45916000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr21:45902000-45903600	Enhancers	Stomach Mucosa	stomach
10	chr21:45902000-45904400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr21:45902400-45903600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr21:45902400-45903600	Enhancers	Gastric	stomach
13	chr21:45902600-45904000	Active TSS	Liver	Liver
14	chr21:45902600-45905400	Weak transcription	Fetal Intestine Small	intestine
15	chr21:45902800-45903800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr21:45903200-45903600	Bivalent/Poised TSS	HepG2	liver
17	chr21:45903400-45903800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr21:45903400-45904000	Bivalent Enhancer	Placenta	Placenta
19	chr21:45903600-45904400	Flanking Bivalent TSS/Enh	HepG2	liver
20	chr21:45903600-45904800	Weak transcription	Gastric	stomach
21	chr21:45903600-45905200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr21:45903800-45904000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr21:45903800-45904000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr21:45903800-45904000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr21:45903800-45904000	Enhancers	Stomach Smooth Muscle	stomach
26	chr21:45903800-45905200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr21:45904000-45904200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr21:45904000-45904600	Flanking Active TSS	Liver	Liver
29	chr21:45904000-45905000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr21:45904000-45905200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr21:45904400-45904600	Flanking Active TSS	HepG2	liver
32	chr21:45904600-45905000	Enhancers	Liver	Liver
33	chr21:45904600-45905000	Enhancers	HepG2	liver
34	chr21:45904800-45905000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr21:45905000-45905200	Enhancers	H1 Cell Line	embryonic stem cell
36	chr21:45905000-45905200	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr21:45905000-45905200	Enhancers	Primary T cells from cord blood	blood
38	chr21:45905000-45905200	Enhancers	Adipose Nuclei	Adipose
39	chr21:45905000-45905200	Enhancers	Stomach Mucosa	stomach
40	chr21:45905000-45905400	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr21:45905000-45905400	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr21:45905000-45905400	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr21:45905000-45905600	Flanking Active TSS	HepG2	liver
44	chr21:45905000-45905800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr21:45905000-45905800	Flanking Active TSS	Liver	Liver
46	chr21:45905000-45906600	Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr21:45905000-45906600	Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr21:45905000-45906600	Enhancers	Placenta	Placenta
49	chr21:45905200-45905400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr21:45905200-45905400	Enhancers	Gastric	stomach

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