Variant report

Variant	esv3404863
Chromosome Location	chr3:90215662-90219960
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 154 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:154 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs147701618	chr3:90215708-90215709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs571630211	chr3:90215728-90215729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs537121750	chr3:90215743-90215744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs577031382	chr3:90215766-90215767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs200331895	chr3:90215806-90215807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs567479588	chr3:90215878-90215879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs182874562	chr3:90215920-90215921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs569760008	chr3:90215929-90215930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs199781195	chr3:90215936-90215937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs113558783	chr3:90215971-90215972	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs142168864	chr3:90216047-90216048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs146042211	chr3:90216093-90216094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs188311205	chr3:90216108-90216109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs192591913	chr3:90216123-90216124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs577571907	chr3:90216124-90216125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs543112693	chr3:90216127-90216128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs182945689	chr3:90216154-90216155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs148249508	chr3:90216175-90216176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs542819013	chr3:90216181-90216182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs559619887	chr3:90216199-90216200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs114544571	chr3:90216226-90216227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs545309679	chr3:90216267-90216268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs565086083	chr3:90216289-90216290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs530943175	chr3:90216316-90216317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs187706980	chr3:90216340-90216341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs567400751	chr3:90216348-90216349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs141299020	chr3:90216379-90216380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs546757584	chr3:90216384-90216385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs566747625	chr3:90216385-90216386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs538920358	chr3:90216404-90216405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs559213545	chr3:90216421-90216422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs191235435	chr3:90216444-90216445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs184857442	chr3:90216469-90216470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs189133455	chr3:90216511-90216512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs62277687	chr3:90216537-90216538	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs542757536	chr3:90216550-90216551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs150382375	chr3:90216615-90216616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs573078158	chr3:90216637-90216638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs534921552	chr3:90216697-90216698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs544933707	chr3:90216698-90216699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs565175585	chr3:90216706-90216707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs137870423	chr3:90216727-90216728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs192132701	chr3:90216728-90216729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs185034429	chr3:90216749-90216750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs530108813	chr3:90216769-90216770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs73846030	chr3:90216780-90216781	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs560450885	chr3:90216781-90216782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs566685229	chr3:90216802-90216803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs189928676	chr3:90216808-90216809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs552540152	chr3:90216817-90216818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Soft tissue tumor	16732325	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Lung cancer	19547694	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:90215000-90225400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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