Variant report

Variant	esv3405640
Chromosome Location	chr10:42606010-42617208
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 505 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:505 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs573270125	chr10:42606010-42606011	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs116525485	chr10:42606034-42606035	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs141662723	chr10:42606039-42606040	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs111209040	chr10:42606042-42606043	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs372341247	chr10:42606044-42606045	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs549223783	chr10:42606046-42606047	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs568955006	chr10:42606048-42606049	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs111209041	chr10:42606050-42606051	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs111209042	chr10:42606051-42606052	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs531461291	chr10:42606053-42606054	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs551084040	chr10:42606055-42606056	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs571260496	chr10:42606060-42606061	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs533561062	chr10:42606067-42606068	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs111209043	chr10:42606098-42606099	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs553202995	chr10:42606107-42606108	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs575489244	chr10:42606113-42606114	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs148237371	chr10:42606114-42606115	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs535618101	chr10:42606142-42606143	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs375407922	chr10:42606143-42606144	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs71014225	chr10:42606144-42606145	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs398013267	chr10:42606146-42606147	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs369282858	chr10:42606168-42606169	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs368258475	chr10:42606198-42606199	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs373183973	chr10:42606199-42606200	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs555575855	chr10:42606201-42606202	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs575313762	chr10:42606202-42606203	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs375828665	chr10:42606224-42606225	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs374031906	chr10:42606228-42606229	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs201704725	chr10:42606256-42606257	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs367872736	chr10:42606267-42606268	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs544732005	chr10:42606281-42606282	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs557862780	chr10:42606285-42606286	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs369220520	chr10:42606321-42606322	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs199802140	chr10:42606333-42606334	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs200298840	chr10:42606336-42606337	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs200731834	chr10:42606338-42606339	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs373388865	chr10:42606355-42606356	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs201561521	chr10:42606362-42606363	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs370405155	chr10:42606400-42606401	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs190863484	chr10:42606402-42606403	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs71503918	chr10:42606403-42606404	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs560451883	chr10:42606407-42606408	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs71503919	chr10:42606434-42606435	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs182576446	chr10:42606442-42606443	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs371774552	chr10:42606446-42606447	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs369781375	chr10:42606448-42606449	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs562716130	chr10:42606449-42606450	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs75992259	chr10:42606479-42606480	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs78241377	chr10:42606480-42606481	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs531305651	chr10:42606485-42606486	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Autism	20531469	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42600200-42606400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:42605800-42608800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr10:42606400-42607800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:42606400-42608800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr10:42606400-42608800	ZNF genes & repeats	Fetal Stomach	stomach
6	chr10:42606400-42609000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:42606600-42608400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr10:42606800-42608400	ZNF genes & repeats	Placenta	Placenta
9	chr10:42614400-42614800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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