Variant report

Variant	esv3406128
Chromosome Location	chr10:403577-406125
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 148 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:148 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs530376836	chr10:403579-403580	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs567486442	chr10:403584-403585	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs566790205	chr10:403585-403586	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs143203138	chr10:403587-403588	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs552577680	chr10:403594-403595	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs373403134	chr10:403598-403599	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs569377112	chr10:403602-403603	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs185126406	chr10:403606-403607	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs556923001	chr10:403611-403612	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs567432394	chr10:403614-403615	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs146181913	chr10:403633-403634	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs553247285	chr10:403638-403639	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs536483448	chr10:403641-403642	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs188303307	chr10:403651-403652	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs370556653	chr10:403653-403654	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs575038145	chr10:403671-403672	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs544294374	chr10:403675-403676	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs113431819	chr10:403681-403682	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs530300668	chr10:403691-403692	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs373849020	chr10:403692-403693	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs371435814	chr10:403721-403722	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs374833132	chr10:403722-403723	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs116429808	chr10:403737-403738	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs369728429	chr10:403741-403742	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs117671740	chr10:403746-403747	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs372560803	chr10:403761-403762	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs376371262	chr10:403791-403792	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs79715861	chr10:403792-403793	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs145134106	chr10:403825-403826	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs147132678	chr10:403837-403838	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs148596417	chr10:403889-403890	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs370963886	chr10:403895-403896	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs568426676	chr10:403897-403898	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs536465855	chr10:403907-403908	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs192541755	chr10:403914-403915	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs142980205	chr10:403916-403917	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs184568643	chr10:403947-403948	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs367983169	chr10:403965-403966	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs574874611	chr10:403966-403967	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs188155239	chr10:404022-404023	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs180830620	chr10:404023-404024	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs115331735	chr10:404049-404050	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs112466426	chr10:404102-404103	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs540826787	chr10:404127-404128	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs72772852	chr10:404128-404129	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs113511644	chr10:404146-404147	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs577652473	chr10:404151-404152	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs546497179	chr10:404165-404166	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs562904355	chr10:404172-404173	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs531745559	chr10:404179-404180	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21858162	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:143 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:370400-418200	Weak transcription	Small Intestine	intestine
2	chr10:375800-418800	Weak transcription	Right Atrium	heart
3	chr10:375800-419800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:380200-423200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:383800-424200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:383800-433000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:384000-406400	Weak transcription	HepG2	liver
8	chr10:384000-414400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:384600-405600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:384600-415200	Weak transcription	Fetal Heart	heart
11	chr10:385600-409200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:385600-417200	Weak transcription	A549	lung
13	chr10:388800-407400	Weak transcription	NH-A	brain
14	chr10:391400-414600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:393200-414600	Strong transcription	Fetal Stomach	stomach
16	chr10:393600-406200	Strong transcription	Liver	Liver
17	chr10:393800-403800	Strong transcription	Brain Substantia Nigra	brain
18	chr10:393800-405000	Strong transcription	Fetal Muscle Trunk	muscle
19	chr10:393800-405000	Strong transcription	Fetal Muscle Leg	muscle
20	chr10:393800-407400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:393800-407600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:393800-414600	Strong transcription	Stomach Smooth Muscle	stomach
23	chr10:393800-414800	Strong transcription	Fetal Brain Female	brain
24	chr10:393800-415000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr10:393800-415400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:393800-415600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:393800-415600	Strong transcription	Left Ventricle	heart
28	chr10:393800-415800	Strong transcription	Osteobl	bone
29	chr10:393800-416400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:394000-403800	Strong transcription	Brain Cingulate Gyrus	brain
31	chr10:394000-405600	Strong transcription	Fetal Intestine Large	intestine
32	chr10:394000-415800	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:394400-415000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:394600-405800	Strong transcription	Fetal Intestine Small	intestine
35	chr10:394600-435400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr10:394800-407200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:395200-408200	Weak transcription	Fetal Kidney	kidney
38	chr10:395600-407200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr10:395600-414400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:395800-489400	Weak transcription	Stomach Mucosa	stomach
41	chr10:396400-411600	Weak transcription	Fetal Brain Male	brain
42	chr10:396600-404400	Strong transcription	Brain Inferior Temporal Lobe	brain
43	chr10:396600-405000	Strong transcription	Brain Hippocampus Middle	brain
44	chr10:396600-406800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:396600-415200	Strong transcription	Brain Germinal Matrix	brain
46	chr10:396600-415400	Strong transcription	Ovary	ovary
47	chr10:396600-415600	Strong transcription	Placenta	Placenta
48	chr10:396800-407200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr10:396800-409000	Strong transcription	Lung	lung
50	chr10:396800-414600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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