Variant report

Variant	esv3406180
Chromosome Location	chr10:27583971-27586519
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27530380..27532088-chr10:27585866..27587933,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107897	chromatin interactions
ENSG00000262412	chromatin interactions

Extended variants
information (count: 45 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs183224670	chr10:27585871-27585872	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs550599691	chr10:27585897-27585898	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs567304015	chr10:27585918-27585919	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs529968147	chr10:27585921-27585922	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs546513052	chr10:27585931-27585932	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs369491068	chr10:27585945-27585946	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs376722320	chr10:27585949-27585950	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs546792163	chr10:27585963-27585964	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs187596932	chr10:27585977-27585978	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs558672226	chr10:27585980-27585981	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs568906436	chr10:27586015-27586016	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs9665037	chr10:27586024-27586025	Inactive region	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs554641381	chr10:27586027-27586028	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs574505542	chr10:27586028-27586029	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs9664367	chr10:27586099-27586100	Inactive region	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs377519662	chr10:27586131-27586132	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs374290919	chr10:27586150-27586151	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs192010481	chr10:27586159-27586160	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs549592729	chr10:27586178-27586179	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs147420124	chr10:27586179-27586180	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs367673363	chr10:27586186-27586187	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs545321607	chr10:27586201-27586202	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs565464407	chr10:27586206-27586207	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs530940604	chr10:27586224-27586225	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs569614230	chr10:27586233-27586234	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs2800408	chr10:27586242-27586243	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	mRNA abundance
27	rs34544855	chr10:27586258-27586259	Inactive region	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs576786195	chr10:27586273-27586274	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs12415459	chr10:27586289-27586290	Inactive region	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs376245116	chr10:27586305-27586306	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs371057819	chr10:27586343-27586344	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs373122375	chr10:27586349-27586350	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs143606173	chr10:27586382-27586383	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs9665127	chr10:27586399-27586400	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs386742242	chr10:27586417-27586418	Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs569019318	chr10:27586418-27586419	Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs201014528	chr10:27586421-27586422	Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs149604060	chr10:27586425-27586426	Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs370238788	chr10:27586426-27586427	Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs145238719	chr10:27586432-27586433	Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs61095916	chr10:27586446-27586447	Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs11015655	chr10:27586453-27586454	Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
43	rs200422348	chr10:27586486-27586487	Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs568121331	chr10:27586510-27586511	Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs533772282	chr10:27586516-27586517	Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	21525872	CNVD
Chronic lymphocytic leukemia	21546498	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27586400-27587800	Enhancers	Primary monocytes fromperipheralblood	blood

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