Variant report

Variant	esv3406694
Chromosome Location	chr14:45385326-45385892
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr14:45385464-45385804	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:45385531-45385748	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr14:45385406-45385519	MCF-7	breast:	n/a	n/a
4	ZBTB33	chr14:45385447-45385811	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:45384727..45387578-chr14:45430910..45433752,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258949	TF binding region
ENSG00000179454	chromatin interactions
ENSG00000198718	chromatin interactions

Extended variants
information (count: 82 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:82 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs73348968	chr14:45385343-45385344	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs189488683	chr14:45385347-45385348	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs72474137	chr14:45385349-45385350	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs79858356	chr14:45385351-45385352	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs372891868	chr14:45385360-45385361	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs541573451	chr14:45385372-45385373	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs140115070	chr14:45385374-45385375	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs368008235	chr14:45385375-45385376	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs533219153	chr14:45385377-45385378	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs111506363	chr14:45385384-45385385	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs138483484	chr14:45385386-45385387	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs199923258	chr14:45385405-45385406	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs531115143	chr14:45385406-45385407	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs549140468	chr14:45385407-45385408	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs199690551	chr14:45385409-45385410	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs377737278	chr14:45385418-45385419	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs145132572	chr14:45385419-45385420	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs546422122	chr14:45385421-45385422	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs571211502	chr14:45385433-45385434	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs202088330	chr14:45385439-45385440	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs374352831	chr14:45385440-45385441	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs531665313	chr14:45385441-45385442	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs61998155	chr14:45385442-45385443	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs556918095	chr14:45385444-45385445	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs201211796	chr14:45385450-45385451	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs202216455	chr14:45385452-45385453	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs71108674	chr14:45385453-45385454	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs536565788	chr14:45385457-45385458	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs554788762	chr14:45385458-45385459	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs573102890	chr14:45385464-45385465	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs71108675	chr14:45385472-45385473	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs541535006	chr14:45385473-45385474	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs553233944	chr14:45385483-45385484	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs200023867	chr14:45385507-45385508	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs578057713	chr14:45385535-45385536	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs367712428	chr14:45385542-45385543	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs545029552	chr14:45385545-45385546	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs563726305	chr14:45385552-45385553	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs62639520	chr14:45385553-45385554	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs531078262	chr14:45385555-45385556	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs542939875	chr14:45385556-45385557	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs561141192	chr14:45385568-45385569	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs371811842	chr14:45385575-45385576	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs528699066	chr14:45385577-45385578	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs373575323	chr14:45385578-45385579	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs578054306	chr14:45385587-45385588	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs564780558	chr14:45385590-45385591	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs375140305	chr14:45385610-45385611	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs376387109	chr14:45385611-45385612	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs370198005	chr14:45385613-45385614	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Colorectal cancer	16774939	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Chronic myeloid leukemia	20724749	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21785460	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	21858162	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21183584	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Renal cell carcinoma	18194544	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21364760	CNVD
Melanoma	17363583	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45368200-45397400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:45375400-45403000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:45382000-45400600	Weak transcription	Left Ventricle	heart
4	chr14:45382000-45408000	Weak transcription	Pancreas	Pancrea
5	chr14:45383000-45397600	Weak transcription	Liver	Liver
6	chr14:45383000-45405800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr14:45384400-45406800	Weak transcription	Fetal Muscle Leg	muscle
8	chr14:45384600-45386400	Weak transcription	Fetal Lung	lung
9	chr14:45384800-45397000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr14:45384800-45397400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:45384800-45408000	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links