Variant report

Variant	esv3406864
Chromosome Location	chr10:97270544-97270918
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs373108964	chr10:97270544-97270545	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs376317084	chr10:97270551-97270552	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs370784110	chr10:97270553-97270554	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs374154811	chr10:97270554-97270555	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs200113127	chr10:97270555-97270556	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs66522177	chr10:97270556-97270557	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs10701227	chr10:97270559-97270560	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs200874517	chr10:97270560-97270561	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs200835885	chr10:97270568-97270569	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs386372152	chr10:97270569-97270570	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs386372153	chr10:97270575-97270576	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs375398034	chr10:97270576-97270577	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs563493657	chr10:97270648-97270649	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs532540248	chr10:97270666-97270667	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs188678190	chr10:97270716-97270717	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs559676038	chr10:97270722-97270723	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs12247017	chr10:97270729-97270730	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs12571588	chr10:97270741-97270742	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs145441813	chr10:97270745-97270746	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs530488561	chr10:97270774-97270775	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs550664060	chr10:97270835-97270836	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs570308759	chr10:97270863-97270864	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs539418150	chr10:97270900-97270901	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs4457684	chr10:97270907-97270908	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Prostate cancer	16573809	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16912164	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97249800-97274000	Weak transcription	Spleen	Spleen
2	chr10:97256800-97273200	Weak transcription	HSMM	muscle
3	chr10:97260000-97272800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:97260000-97278400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:97260800-97272800	Weak transcription	Esophagus	oesophagus
6	chr10:97261800-97271200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:97262000-97271800	Weak transcription	HMEC	breast
8	chr10:97262400-97271000	Weak transcription	Lung	lung
9	chr10:97262400-97275000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:97262400-97278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:97265200-97271000	Weak transcription	Right Ventricle	heart
12	chr10:97265200-97272000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:97265400-97270800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:97266400-97271000	Weak transcription	Brain Angular Gyrus	brain
15	chr10:97266400-97272200	Weak transcription	Fetal Brain Male	brain
16	chr10:97266400-97272800	Weak transcription	Fetal Brain Female	brain
17	chr10:97266400-97273600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:97267200-97271000	Weak transcription	Gastric	stomach
19	chr10:97267600-97275000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr10:97268600-97271000	Weak transcription	Brain Substantia Nigra	brain
21	chr10:97268800-97270600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:97268800-97270800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:97268800-97272800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:97268800-97273000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:97269000-97270600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:97269000-97270600	Weak transcription	Left Ventricle	heart
27	chr10:97269000-97270600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:97269000-97270800	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:97269000-97271000	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr10:97269000-97271000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:97269000-97271000	Weak transcription	Placenta	Placenta
32	chr10:97269000-97271000	Weak transcription	Pancreas	Pancrea
33	chr10:97269000-97271000	Enhancers	Stomach Smooth Muscle	stomach
34	chr10:97269000-97271400	Weak transcription	Liver	Liver
35	chr10:97269000-97272200	Weak transcription	Psoas Muscle	Psoas
36	chr10:97269000-97272200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr10:97269000-97272400	Weak transcription	HSMMtube	muscle
38	chr10:97269000-97272800	Weak transcription	Small Intestine	intestine
39	chr10:97269000-97273000	Weak transcription	Ovary	ovary
40	chr10:97269000-97273000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr10:97269000-97277200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:97269000-97282600	Weak transcription	Fetal Kidney	kidney
43	chr10:97269200-97270600	Weak transcription	Brain Anterior Caudate	brain
44	chr10:97269200-97270600	Weak transcription	Right Atrium	heart
45	chr10:97269200-97270600	Weak transcription	Stomach Mucosa	stomach
46	chr10:97269200-97272400	Enhancers	Colon Smooth Muscle	Colon
47	chr10:97269200-97272800	Weak transcription	HUVEC	blood vessel
48	chr10:97269200-97273800	Weak transcription	Adipose Nuclei	Adipose
49	chr10:97269200-97277200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:97269400-97270600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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