Variant report

Variant	esv3407062
Chromosome Location	chr7:57015435-57018583
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr7:57015204-57015480	HepG2	liver:	n/a	n/a
2	HEY1	chr7:57016756-57017011	HepG2	liver:	n/a	n/a
3	POLR2A	chr7:57016867-57017013	A549	lung:	n/a	n/a
4	POLR2A	chr7:57016834-57017008	A549	lung:	n/a	n/a
5	POLR2A	chr7:57016870-57016981	A549	lung:	n/a	n/a
6	POLR2A	chr7:57016870-57016980	HepG2	liver:	n/a	n/a
7	POLR2A	chr7:57016752-57017043	A549	lung:	n/a	n/a
8	SP1	chr7:57015211-57015638	HepG2	liver:	n/a	chr7:57015266-57015276 chr7:57015267-57015276

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:57016153-57016203	AG10803	skin:	n/a
2	chr7:57017956-57018006	Jurkat	blood:	n/a
3	chr7:57017956-57018006	NB4	blood:	n/a
4	chr7:57017956-57018006	AG04450	lung:	fetal
5	chr7:57016153-57016203	SK-N-MC	brain:	n/a
6	chr7:57016153-57016203	SKMC	muscle:	n/a
7	chr7:57016153-57016203	HEEpiC	esophagus:	n/a
8	chr7:57017956-57018006	SK-N-SH	brain:	n/a
9	chr7:57016153-57016203	HCM	heart:	n/a
10	chr7:57017956-57018006	HRE	kidney:	n/a
11	chr7:57017956-57018006	CMK	blood:	n/a
12	chr7:57016153-57016203	BE2_C	brain:	n/a
13	chr7:57016153-57016203	HRPEpiC	eye:	n/a
14	chr7:57017956-57018006	K562	blood:	n/a
15	chr7:57017956-57018006	SK-N-SH_RA	brain:	n/a
16	chr7:57017956-57018006	AG09319	gingival:	n/a
17	chr7:57016153-57016203	MCF-7	breast:	n/a
18	chr7:57016153-57016203	HRCEpiC	kidney:	n/a
19	chr7:57017956-57018006	AG10803	skin:	n/a
20	chr7:57016153-57016203	HCT-116	colon:	n/a
21	chr7:57016153-57016203	ovcar-3	ovarian:	n/a
22	chr7:57017956-57018006	LNCaP	prostate:	n/a
23	chr7:57017956-57018006	HMEC	breast:	n/a
24	chr7:57016153-57016203	GM12892	blood:	n/a
25	chr7:57017956-57018006	GM12878	blood:	n/a
26	chr7:57016153-57016203	H1-hESC	embryonic stem cell:	embryo
27	chr7:57016153-57016203	Jurkat	blood:	n/a
28	chr7:57017956-57018006	HCPEpiC	choroid plexus:	n/a
29	chr7:57017956-57018006	GM12891	blood:	n/a
30	chr7:57016153-57016203	A549	lung:	n/a
31	chr7:57017956-57018006	GM19239	blood:	n/a
32	chr7:57017956-57018006	AG04449	skin:	fetal
33	chr7:57017956-57018006	MCF-7	breast:	n/a
34	chr7:57016153-57016203	HRE	kidney:	n/a
35	chr7:57016153-57016203	HCPEpiC	choroid plexus:	n/a
36	chr7:57016153-57016203	HMEC	breast:	n/a
37	chr7:57017956-57018006	NH-A	brain:	n/a
38	chr7:57016153-57016203	GM12891	blood:	n/a
39	chr7:57017956-57018006	HPAEpiC	pulmonary alveolar:	n/a
40	chr7:57016153-57016203	NT2-D1	testis:	n/a
41	chr7:57016153-57016203	ECC-1	luminal epithelium:	n/a
42	chr7:57016153-57016203	K562	blood:	n/a
43	chr7:57017956-57018006	IMR90	lung:	fetal
44	chr7:57016153-57016203	HepG2	liver:	n/a
45	chr7:57017956-57018006	RPTEC	kidney:	n/a
46	chr7:57017956-57018006	HUVEC	blood vessel:	n/a
47	chr7:57017956-57018006	Caco-2	colon:	n/a
48	chr7:57017956-57018006	HCT-116	colon:	n/a
49	chr7:57017956-57018006	U87	brain:	n/a
50	chr7:57017956-57018006	NT2-D1	testis:	n/a

No data

Variant related genes	Relation type
ENSG00000225244	TF binding region
ENSG00000225244	CpG island

Extended variants
information (count: 10 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200553164	chr7:57015508-57015509	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs375862245	chr7:57015509-57015510	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs371672957	chr7:57015536-57015537	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs189304959	chr7:57015623-57015624	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs560725838	chr7:57015632-57015633	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs188235063	chr7:57016153-57016154	Inactive region	CpG island	1 gene(s)	Overlapped CNVs	n/a
7	rs147567136	chr7:57016183-57016184	Inactive region	CpG island	1 gene(s)	Overlapped CNVs	n/a
8	rs113190187	chr7:57016960-57016961	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs185209155	chr7:57016989-57016990	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs189601686	chr7:57017040-57017041	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Wilms tumour	21544195	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Esophageal cancer	21851588	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Intracranial ependymoma	16609018	CNVD
Lung cancer	21911935	CNVD
Urothelial cell carcinoma	18451213	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	19455253	CNVD
Lung cancer	17925434	CNVD
Glioma	24330732	CNVD
Lung adenocarcinoma	23938291	CNVD
Glioma	17634744	CNVD
Oral squamous cell carcinoma	19276369	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Lung cancer	20031968	CNVD
Glioblastoma	17090523	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Glioma	17123091	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Medullary thyroid carcinoma	18765511	CNVD
small cell lung cancer	20016488	CNVD
Bipolar disorder	19114987	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links