Variant report

Variant	esv3407334
Chromosome Location	chr7:58028710-58033208
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 570 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:570 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs554823235	chr7:58028711-58028712	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs113324369	chr7:58028726-58028727	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs562646025	chr7:58028728-58028729	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs553377592	chr7:58028735-58028736	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs190918083	chr7:58028742-58028743	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs36166249	chr7:58028744-58028745	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs559569474	chr7:58028764-58028765	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs578004894	chr7:58028781-58028782	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs545063757	chr7:58028783-58028784	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs200096937	chr7:58028787-58028788	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs563659438	chr7:58028793-58028794	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs577580171	chr7:58028795-58028796	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs542885031	chr7:58028800-58028801	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs369705575	chr7:58028817-58028818	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs182450320	chr7:58028819-58028820	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs186579557	chr7:58028830-58028831	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs545460124	chr7:58028831-58028832	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs373912865	chr7:58028836-58028837	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs191889534	chr7:58028840-58028841	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs532175408	chr7:58028845-58028846	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs143412498	chr7:58028854-58028855	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs568827566	chr7:58028855-58028856	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs148345793	chr7:58028861-58028862	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs554886466	chr7:58028865-58028866	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs112081292	chr7:58028880-58028881	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs202030668	chr7:58028882-58028883	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs566699361	chr7:58028883-58028884	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs533970978	chr7:58028904-58028905	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs553472124	chr7:58028907-58028908	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs578040826	chr7:58028914-58028915	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs200488360	chr7:58028922-58028923	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs545436839	chr7:58028934-58028935	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs79935737	chr7:58028939-58028940	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs557098494	chr7:58028943-58028944	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs527815607	chr7:58028944-58028945	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs77806193	chr7:58028946-58028947	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs112860717	chr7:58028951-58028952	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs113028791	chr7:58028954-58028955	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs113154463	chr7:58028968-58028969	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs575201008	chr7:58028971-58028972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs74451903	chr7:58028980-58028981	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs78979261	chr7:58028984-58028985	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs76970560	chr7:58028987-58028988	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs542950038	chr7:58028997-58028998	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs111985027	chr7:58029007-58029008	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs528709170	chr7:58029008-58029009	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs74886712	chr7:58029034-58029035	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs540463602	chr7:58029045-58029046	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs111619265	chr7:58029047-58029048	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs547926048	chr7:58029049-58029050	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Wilms tumour	21544195	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
head and neck squamous cell carcinoma	17671120	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:58026400-58036600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr7:58026400-58042800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr7:58026400-58043000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:58032200-58038400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr7:58032400-58032800	Active TSS	Aorta	Aorta
6	chr7:58032400-58043000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell

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