Variant report

Variant	esv3408524
Chromosome Location	chr3:90392151-90398551
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 577 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:577 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs199811382	chr3:90392154-90392155	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs9827332	chr3:90392177-90392178	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs540895197	chr3:90392186-90392187	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs188009648	chr3:90392187-90392188	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs192239174	chr3:90392262-90392263	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs549673407	chr3:90392279-90392280	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs113710099	chr3:90392293-90392294	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs184304584	chr3:90392310-90392311	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs529267915	chr3:90392325-90392326	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs148705028	chr3:90392329-90392330	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs373205082	chr3:90392336-90392337	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs549030144	chr3:90392337-90392338	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs55989226	chr3:90392339-90392340	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs201123378	chr3:90392357-90392358	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs370666852	chr3:90392363-90392364	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs199761823	chr3:90392386-90392387	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs200948701	chr3:90392395-90392396	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs551736603	chr3:90392402-90392403	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs201635222	chr3:90392404-90392405	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs571902773	chr3:90392406-90392407	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs113156183	chr3:90392430-90392431	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs199995917	chr3:90392434-90392435	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs200706268	chr3:90392437-90392438	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs55635962	chr3:90392461-90392462	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs557691446	chr3:90392472-90392473	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs576080818	chr3:90392476-90392477	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs535460384	chr3:90392484-90392485	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs200113556	chr3:90392485-90392486	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs555418005	chr3:90392493-90392494	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs572091256	chr3:90392497-90392498	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs145888536	chr3:90392529-90392530	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs143098395	chr3:90392537-90392538	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs541209486	chr3:90392549-90392550	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs529316290	chr3:90392559-90392560	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs564085280	chr3:90392561-90392562	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs200023980	chr3:90392572-90392573	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs201310313	chr3:90392587-90392588	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs111845878	chr3:90392588-90392589	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs543282806	chr3:90392593-90392594	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs192273418	chr3:90392620-90392621	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs139545700	chr3:90392637-90392638	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs563255264	chr3:90392644-90392645	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs144256762	chr3:90392648-90392649	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs141398561	chr3:90392651-90392652	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs141905540	chr3:90392655-90392656	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs190417792	chr3:90392656-90392657	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs149663900	chr3:90392657-90392658	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs559796692	chr3:90392659-90392660	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs143855518	chr3:90392670-90392671	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs550685563	chr3:90392673-90392674	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Soft tissue tumor	16732325	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Lung cancer	19547694	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:90389800-90398200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr3:90390400-90399600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:90392600-90392800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr3:90393000-90396800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:90393400-90394000	ZNF genes & repeats	HUVEC	blood vessel
6	chr3:90394000-90395600	Weak transcription	HUVEC	blood vessel
7	chr3:90395200-90396800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr3:90395200-90397800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr3:90395400-90397600	ZNF genes & repeats	HepG2	liver
10	chr3:90395600-90395800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:90395600-90395800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
12	chr3:90395600-90395800	ZNF genes & repeats	Dnd41	blood
13	chr3:90395600-90395800	ZNF genes & repeats	GM12878-XiMat	blood
14	chr3:90395600-90395800	Flanking Bivalent TSS/Enh	Hela-S3	cervix
15	chr3:90395600-90395800	ZNF genes & repeats	HMEC	breast
16	chr3:90395600-90395800	ZNF genes & repeats	HSMM	muscle
17	chr3:90395600-90395800	ZNF genes & repeats	HSMMtube	muscle
18	chr3:90395600-90395800	ZNF genes & repeats	HUVEC	blood vessel
19	chr3:90395600-90395800	ZNF genes & repeats	K562	blood
20	chr3:90395600-90395800	ZNF genes & repeats	NH-A	brain
21	chr3:90395600-90395800	ZNF genes & repeats	NHDF-Ad	bronchial
22	chr3:90395600-90395800	ZNF genes & repeats	NHEK	skin
23	chr3:90395600-90395800	ZNF genes & repeats	NHLF	lung
24	chr3:90395600-90395800	ZNF genes & repeats	Osteobl	bone
25	chr3:90395600-90396400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
26	chr3:90395800-90396400	Weak transcription	NH-A	brain
27	chr3:90395800-90400400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:90395800-90402400	Weak transcription	K562	blood

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