Variant report
| Variant | esv3409477 |
|---|---|
| Chromosome Location | chr19:23227788-23231709 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ZNF724P-1 | chr19:23229875-23229898 | NONHSAT063848 |
| 2 | lnc-ZNF724P-1 | chr19:23229760-23229898 | ENSG00000261615.2 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs146871814 | chr19:23229834-23229835 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs553942753 | chr19:23229844-23229845 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs189675580 | chr19:23231206-23231207 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs374991199 | chr19:23231263-23231264 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs557630138 | chr19:23231282-23231283 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs73027648 | chr19:23231338-23231339 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 7 | rs543371352 | chr19:23231390-23231391 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs151105572 | chr19:23231392-23231393 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs1381880 | chr19:23231399-23231400 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 10 | rs565336100 | chr19:23231411-23231412 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs7260403 | chr19:23231416-23231417 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs532477663 | chr19:23231417-23231418 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs551149863 | chr19:23231450-23231451 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs141052252 | chr19:23231510-23231511 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs371228929 | chr19:23231602-23231603 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs530692214 | chr19:23231609-23231610 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs549292858 | chr19:23231623-23231624 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs567464888 | chr19:23231698-23231699 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:41)
| Disease | PMID | Source |
|---|---|---|
| Medulloblastoma | 16783165 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Chordoma | 18071362 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Oral cancer | 21386901 | CNVD |
| ovarian endometriomas | 16273235 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Cervical cancer | 21063398 | CNVD |
| Myelodysplastic syndrome | 17634407 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Chordoma | 21602918 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Cancer | 21637783 | CNVD |
| Retinoblastoma | 21504564 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| Cancer | 20164919 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Autism | 22495311 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Acute lymphoblastic leukemia | 21248843 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Adenoid cystic carcinoma | 18698036 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Cancer | 21183584 | CNVD |
| Colorectal cancer | 20459617 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Ductal carcinoma | 22052326 | CNVD |
| Cancer | 20164920 | CNVD |
| Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
| early-passage human iPS cells | 21368824 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:23231200-23232000 | ZNF genes & repeats | Pancreas | Pancrea |
| 2 | chr19:23231400-23232800 | Enhancers | Placenta | Placenta |
