Variant report

Variant	esv3409533
Chromosome Location	chr13:54817251-54820049
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OLFM4-4	chr13:54817928-54819360	NONHSAT034031
2	lnc-OLFM4-4	chr13:54817929-54818572	NONHSAT034030

Extended variants
information (count: 118 )
Associated
traits (count: 109 )

Variant overlapped rSNPs/rCNVs (count:118 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs143662957	chr13:54817259-54817260	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs114097110	chr13:54817321-54817322	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs116882258	chr13:54817325-54817326	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs533217093	chr13:54817351-54817352	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs373923471	chr13:54817425-54817426	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs625472	chr13:54817470-54817471	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs371025711	chr13:54817490-54817491	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs111840812	chr13:54817494-54817495	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs566947366	chr13:54817506-54817507	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs566658908	chr13:54817511-54817512	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs551739295	chr13:54817512-54817513	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs375814914	chr13:54817513-54817514	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs535531914	chr13:54817574-54817575	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs535029532	chr13:54817578-54817579	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs115638156	chr13:54817583-54817584	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs377642626	chr13:54817592-54817593	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs574941213	chr13:54817682-54817683	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs537603931	chr13:54817704-54817705	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs146787466	chr13:54817706-54817707	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs567460008	chr13:54817712-54817713	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs371028289	chr13:54817713-54817714	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs75579248	chr13:54817764-54817765	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs636911	chr13:54817772-54817773	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs118056021	chr13:54817777-54817778	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs559809868	chr13:54817853-54817854	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs113317332	chr13:54817854-54817855	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs540976903	chr13:54817866-54817867	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs144549363	chr13:54817869-54817870	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs151115107	chr13:54817934-54817935	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs538393122	chr13:54817956-54817957	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs141058608	chr13:54818002-54818003	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs150240890	chr13:54818008-54818009	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs532054711	chr13:54818114-54818115	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs556099108	chr13:54818196-54818197	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs367706341	chr13:54818216-54818217	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs565554810	chr13:54818234-54818235	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs534567328	chr13:54818260-54818261	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs548601709	chr13:54818277-54818278	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs76069324	chr13:54818336-54818337	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs149064998	chr13:54818341-54818342	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs183044845	chr13:54818342-54818343	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs11839134	chr13:54818381-54818382	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs539957402	chr13:54818416-54818417	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs187001983	chr13:54818468-54818469	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs117799470	chr13:54818489-54818490	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs145823704	chr13:54818490-54818491	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs561070561	chr13:54818536-54818537	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs555620036	chr13:54818570-54818571	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs533594898	chr13:54818593-54818594	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs563164484	chr13:54818594-54818595	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:109)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Squamous cell cancer	20885788	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	16774939	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	19242612	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	17245344	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Retinoblastoma	19183342	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	17053054	CNVD
Multiple myeloma	19135901	CNVD
Autism	18414403	CNVD
Neurocytoma	17123091	CNVD
Central neurocytomas	17123091	CNVD
Prostate cancer	16461572	CNVD
Merkel cell carcinoma	19020549	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
lymphocytic leukemia	21291569	CNVD
Multiple myeloma	17550852	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21858162	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute myeloid leukemia	17237825	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Glioblastoma multiforme	21922591	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Gastric cancer	17908304	CNVD
Breast cancer	18852474	CNVD
Myelofibrosis	22110671	CNVD
craniofacial dysmorphism	21918468	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Breast cancer	17393978	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Urothelial carcinoma	21177765	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54801400-54821800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:54807200-54821200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr13:54815400-54819800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:54816200-54821400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:54816400-54821200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:54819800-54820400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:54820000-54820600	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links