Variant report

Variant	esv3409578
Chromosome Location	chr4:131869102-131872400
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:3075352..3076921-chr4:131867632..131869317,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197386	chromatin interactions
ENSG00000251075	chromatin interactions

Extended variants
information (count: 14 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs117428854	chr4:131869111-131869112	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs368609175	chr4:131869112-131869113	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs567261282	chr4:131869129-131869130	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs570590514	chr4:131869141-131869142	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs76681529	chr4:131869179-131869180	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs552980101	chr4:131869184-131869185	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs566612285	chr4:131869188-131869189	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs539481307	chr4:131869209-131869210	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs539141387	chr4:131869247-131869248	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs10212862	chr4:131869250-131869251	Inactive region	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs10212867	chr4:131869269-131869270	Inactive region	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs544539197	chr4:131869281-131869282	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs555293947	chr4:131869309-131869310	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs116180381	chr4:131869315-131869316	Inactive region	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Colorectal cancer	16272173	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Neuroblastoma	21899760	CNVD
Renal cell carcinoma	18194544	CNVD
Olfactory neuroblastoma	18408657	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20459617	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Mental retardation	17847001	CNVD
Myelofibrosis	22110671	CNVD
Autism	18923514	CNVD
Autism	22241247	CNVD
Mental retardation	17901693	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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