Variant report

Variant	esv3410313
Chromosome Location	chr7:61096238-61265573
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1970 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:1970 , 50 per page) page: 1 2 3 4 5 6 7 ... 40

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567551613	chr7:61096251-61096252	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs76715772	chr7:61096259-61096260	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs565421127	chr7:61096260-61096261	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs555466051	chr7:61096271-61096272	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs574230084	chr7:61096274-61096275	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs536672100	chr7:61096278-61096279	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs556278710	chr7:61096288-61096289	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs375386519	chr7:61096293-61096294	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs113981271	chr7:61096295-61096296	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs536702828	chr7:61096296-61096297	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs150727342	chr7:61096312-61096313	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs139011478	chr7:61096317-61096318	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs369094986	chr7:61096323-61096324	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs368753399	chr7:61096325-61096326	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs144160067	chr7:61096333-61096334	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs199871708	chr7:61096335-61096336	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs371852525	chr7:61096353-61096354	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs576519761	chr7:61096368-61096369	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs537771889	chr7:61096385-61096386	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs372783701	chr7:61096390-61096391	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs376686257	chr7:61096393-61096394	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs555694907	chr7:61096395-61096396	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs574106298	chr7:61096398-61096399	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs538764075	chr7:61096401-61096402	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs541853504	chr7:61096403-61096404	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs190206172	chr7:61096405-61096406	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs559990604	chr7:61096409-61096410	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs200480128	chr7:61096413-61096414	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs201538056	chr7:61096415-61096416	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs11135614	chr7:61096417-61096418	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs565499565	chr7:61096418-61096419	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs181746632	chr7:61096422-61096423	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs11979912	chr7:61096425-61096426	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs572323715	chr7:61096426-61096427	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs541213835	chr7:61096427-61096428	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs184820790	chr7:61096435-61096436	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs190048744	chr7:61096438-61096439	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs200955042	chr7:61096446-61096447	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs530114304	chr7:61096453-61096454	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs548590781	chr7:61096455-61096456	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs566837367	chr7:61096456-61096457	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs372748142	chr7:61096461-61096462	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs552060606	chr7:61096464-61096465	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs10866809	chr7:61096477-61096478	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs537709743	chr7:61096480-61096481	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs372694986	chr7:61096490-61096491	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs199594325	chr7:61096491-61096492	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs556032287	chr7:61096500-61096501	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs574791077	chr7:61096503-61096504	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs574441756	chr7:61096507-61096508	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Autism	18414403	CNVD
Colorectal cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
Recurrent pregnancy loss	19789632	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:172 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:61087600-61098000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr7:61087800-61098000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr7:61091400-61098000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr7:61092200-61099600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:61093800-61097200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:61095400-61097000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:61096400-61097000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:61096600-61098000	ZNF genes & repeats	Liver	Liver
9	chr7:61097000-61099400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:61097200-61097800	ZNF genes & repeats	Psoas Muscle	Psoas
11	chr7:61097400-61098000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
12	chr7:61097600-61098000	ZNF genes & repeats	Adipose Nuclei	Adipose
13	chr7:61097600-61098000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
14	chr7:61097800-61099200	Weak transcription	Psoas Muscle	Psoas
15	chr7:61098000-61099200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:61098000-61099400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:61098000-61099400	Weak transcription	Liver	Liver
18	chr7:61098000-61099400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr7:61098200-61099400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:61099200-61100400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:61099200-61100400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
22	chr7:61099200-61100400	ZNF genes & repeats	Psoas Muscle	Psoas
23	chr7:61099200-61100400	ZNF genes & repeats	Thymus	Thymus
24	chr7:61099400-61100000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
25	chr7:61099400-61100200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
26	chr7:61099400-61100200	ZNF genes & repeats	Rectal Smooth Muscle	rectum
27	chr7:61099400-61100400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
28	chr7:61099400-61100400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr7:61099400-61100400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:61099400-61100400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
31	chr7:61099400-61100400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
32	chr7:61099400-61100400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
33	chr7:61099400-61100400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
34	chr7:61099400-61100400	ZNF genes & repeats	Liver	Liver
35	chr7:61099400-61100400	ZNF genes & repeats	Brain Substantia Nigra	brain
36	chr7:61099400-61100400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
37	chr7:61099400-61100400	Bivalent/Poised TSS	Right Ventricle	heart
38	chr7:61099400-61100400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
39	chr7:61099600-61099800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:61099600-61099800	ZNF genes & repeats	Placenta	Placenta
41	chr7:61099600-61099800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
42	chr7:61099600-61099800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
43	chr7:61099600-61100200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
44	chr7:61099600-61100200	ZNF genes & repeats	Adipose Nuclei	Adipose
45	chr7:61099600-61100200	ZNF genes & repeats	Colonic Mucosa	Colon
46	chr7:61099600-61100400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr7:61099600-61100400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
48	chr7:61099600-61100400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
49	chr7:61099600-61100400	ZNF genes & repeats	Brain Anterior Caudate	brain
50	chr7:61099600-61100400	ZNF genes & repeats	Colon Smooth Muscle	Colon

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