Variant report

Variant	esv3410487
Chromosome Location	chr2:40846048-40850646
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM178-7	chr2:40847860-40848096	NONHSAT070282

Extended variants
information (count: 166 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:166 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs552037381	chr2:40846061-40846062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs570441382	chr2:40846067-40846068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs531527508	chr2:40846103-40846104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs569927406	chr2:40846108-40846109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs77668317	chr2:40846145-40846146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs371954521	chr2:40846147-40846148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs568252586	chr2:40846181-40846182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs535175415	chr2:40846280-40846281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs553921948	chr2:40846288-40846289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs141070835	chr2:40846290-40846291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs78842739	chr2:40846329-40846330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs150167268	chr2:40846430-40846431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs182807820	chr2:40846439-40846440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs138365661	chr2:40846491-40846492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs549550085	chr2:40846515-40846516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs556435063	chr2:40846537-40846538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs574997259	chr2:40846539-40846540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs541922291	chr2:40846573-40846574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs114995695	chr2:40846599-40846600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs188429025	chr2:40846616-40846617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs144487327	chr2:40846650-40846651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs138060658	chr2:40846660-40846661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs550148223	chr2:40846673-40846674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs74912612	chr2:40846679-40846680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs376793238	chr2:40846695-40846696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs143200388	chr2:40846730-40846731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs368142842	chr2:40846755-40846756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs539104076	chr2:40846757-40846758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs75343067	chr2:40846791-40846792	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs529122597	chr2:40846825-40846826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs112878154	chr2:40846858-40846859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs42788	chr2:40846875-40846876	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs539431213	chr2:40846882-40846883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs147499218	chr2:40846903-40846904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs371362307	chr2:40846914-40846915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs112663173	chr2:40846924-40846925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs538129494	chr2:40846939-40846940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs17026380	chr2:40846953-40846954	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs574918698	chr2:40847046-40847047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs535680739	chr2:40847092-40847093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs140087257	chr2:40847139-40847140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs2302630	chr2:40847164-40847165	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs545899671	chr2:40847205-40847206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs192859142	chr2:40847259-40847260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs57643403	chr2:40847274-40847275	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs543337740	chr2:40847315-40847316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs79314129	chr2:40847318-40847319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs42787	chr2:40847422-40847423	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs547652681	chr2:40847468-40847469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs42786	chr2:40847506-40847507	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Breast cancer	17393978	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17387387	CNVD
Neuroblastoma	17533364	CNVD
Neuroblastoma	18923191	CNVD
Endometrial cancer	22040021	CNVD
Adrenal tumor	17535989	CNVD
Breast cancer	21264507	CNVD
Basal cell lymphoma	17053054	CNVD
Medulloblastoma	17522785	CNVD
Cancer	23418310	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Ependymoma	16718352	CNVD
lymphocytic leukemia	21291569	CNVD
Prostate cancer	18632612	CNVD
Bladder cancer	21909424	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	20505157	CNVD
Autism	17483303	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Medulloblastoma	20607354	CNVD
Leukemia	18628472	CNVD
Autism	22495311	CNVD
Autism	19521722	CNVD
Autism	18522746	CNVD
Non-small cell lung cancer	18927303	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	16397240	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21508638	CNVD
Neurodevelopmental disorder	22521361	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Cancer	16751803	CNVD
Breast cancer	21364760	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Williams Syndrome	20824207	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40844400-40853000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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