Variant report

Variant	esv3411360
Chromosome Location	chr11:107740812-107741408
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107728375..107730926-chr11:107740655..107744568,3	K562	blood:

Variant related genes	Relation type
ENSG00000110660	chromatin interactions

Extended variants
information (count: 27 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11212413	chr11:107740817-107740818	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs573656247	chr11:107740821-107740822	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs139432607	chr11:107740826-107740827	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs556807279	chr11:107740827-107740828	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs372736310	chr11:107740882-107740883	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs565950622	chr11:107740906-107740907	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs200674100	chr11:107740910-107740911	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs79638058	chr11:107740980-107740981	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs527915275	chr11:107740988-107740989	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs542692714	chr11:107740995-107740996	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs369022835	chr11:107741006-107741007	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs561094434	chr11:107741050-107741051	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs199939227	chr11:107741076-107741077	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs58139338	chr11:107741098-107741099	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs111712934	chr11:107741111-107741112	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs146425207	chr11:107741112-107741113	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs373245708	chr11:107741139-107741140	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs533095173	chr11:107741155-107741156	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs548352251	chr11:107741209-107741210	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs73007259	chr11:107741216-107741217	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs566654303	chr11:107741230-107741231	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs534005119	chr11:107741232-107741233	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs575530588	chr11:107741238-107741239	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs376573638	chr11:107741287-107741288	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs567408390	chr11:107741365-107741366	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs537802754	chr11:107741372-107741373	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs536707129	chr11:107741373-107741374	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Obesity	19966786	CNVD
Renal cell carcinoma	21668985	CNVD
Cancer	20164920	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Attention deficit hyperactivity disorder	19546859	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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