Variant report

Variant	esv3412326
Chromosome Location	chr19:24242428-24242807
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF681-4	chr19:24242644-24243263	NONHSAT063954

Extended variants
information (count: 20 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs183933702	chr19:24242428-24242429	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs141646840	chr19:24242439-24242440	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs112435025	chr19:24242440-24242441	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs145932459	chr19:24242441-24242442	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs55717703	chr19:24242443-24242444	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs576049616	chr19:24242454-24242455	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs544692635	chr19:24242497-24242498	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs386808209	chr19:24242507-24242508	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs62114823	chr19:24242509-24242510	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs533629037	chr19:24242520-24242521	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs558173135	chr19:24242611-24242612	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs576429116	chr19:24242644-24242645	Weak transcription Strong transcription Genic enhancers Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
13	rs17206087	chr19:24242656-24242657	Weak transcription Strong transcription Genic enhancers Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs375770283	chr19:24242657-24242658	Weak transcription Strong transcription Genic enhancers Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
15	rs556398443	chr19:24242711-24242712	Weak transcription Strong transcription Genic enhancers Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs574951458	chr19:24242718-24242719	Weak transcription Strong transcription Genic enhancers Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs560789175	chr19:24242728-24242729	Weak transcription Strong transcription Genic enhancers Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
18	rs542381996	chr19:24242765-24242766	Weak transcription Strong transcription Genic enhancers Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
19	rs560498787	chr19:24242771-24242772	Weak transcription Strong transcription Genic enhancers Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs572534803	chr19:24242791-24242792	Weak transcription Strong transcription Genic enhancers Enhancers	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24217400-24257600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:24217600-24258400	Weak transcription	Psoas Muscle	Psoas
3	chr19:24220000-24256800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:24221200-24244600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr19:24223800-24243400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr19:24224800-24244600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr19:24225000-24244400	Strong transcription	Thymus	Thymus
8	chr19:24225000-24245400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr19:24225000-24252000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr19:24225000-24257600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr19:24225200-24244200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr19:24225200-24244600	Strong transcription	Fetal Stomach	stomach
13	chr19:24225200-24251800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr19:24225400-24244200	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr19:24225400-24244200	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr19:24225400-24244400	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr19:24225400-24244400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr19:24225400-24244600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr19:24225400-24244600	Strong transcription	Stomach Smooth Muscle	stomach
20	chr19:24225400-24251800	Strong transcription	Liver	Liver
21	chr19:24225400-24256400	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr19:24226800-24257200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr19:24227800-24243600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr19:24227800-24244200	Strong transcription	Duodenum Mucosa	Duodenum
25	chr19:24227800-24244400	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr19:24227800-24251800	Strong transcription	Fetal Muscle Trunk	muscle
27	chr19:24228600-24250800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr19:24228800-24244600	Strong transcription	Primary B cells from peripheral blood	blood
29	chr19:24228800-24257000	Strong transcription	Dnd41	blood
30	chr19:24229000-24244000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr19:24229000-24245400	Strong transcription	Left Ventricle	heart
32	chr19:24229000-24247000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr19:24229000-24252200	Strong transcription	H9 Cell Line	embryonic stem cell
34	chr19:24229200-24243800	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr19:24229400-24243400	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr19:24229400-24244400	Strong transcription	Adipose Nuclei	Adipose
37	chr19:24229400-24244600	Strong transcription	Brain Hippocampus Middle	brain
38	chr19:24229400-24245600	Strong transcription	Primary T cells from cord blood	blood
39	chr19:24229600-24244200	Strong transcription	Rectal Smooth Muscle	rectum
40	chr19:24229600-24244400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr19:24229600-24245200	Strong transcription	Fetal Muscle Leg	muscle
42	chr19:24229800-24244200	Strong transcription	Primary hematopoietic stem cells	blood
43	chr19:24230200-24243000	Strong transcription	GM12878-XiMat	blood
44	chr19:24230800-24244400	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr19:24232800-24260400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr19:24235600-24242600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr19:24236200-24269400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr19:24237000-24247200	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr19:24237400-24252200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr19:24237400-24256000	Weak transcription	Fetal Heart	heart

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