Variant report

Variant	esv3412859
Chromosome Location	chr1:189929607-189930003
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs570477179	chr1:189929624-189929625	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs115523541	chr1:189929661-189929662	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs556875370	chr1:189929675-189929676	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs570375257	chr1:189929691-189929692	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs535663253	chr1:189929722-189929723	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs371685249	chr1:189929737-189929738	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs147039545	chr1:189929745-189929746	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs541151020	chr1:189929763-189929764	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs557698428	chr1:189929790-189929791	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs577601717	chr1:189929808-189929809	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs543456417	chr1:189929824-189929825	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs562627925	chr1:189929850-189929851	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs193283478	chr1:189929886-189929887	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs74925860	chr1:189929898-189929899	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs561940793	chr1:189929901-189929902	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs527346906	chr1:189929949-189929950	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs547499956	chr1:189929960-189929961	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs570589440	chr1:189929963-189929964	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs138287726	chr1:189929966-189929967	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs142485030	chr1:189929979-189929980	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs570214213	chr1:189929981-189929982	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs12130856	chr1:189929983-189929984	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	20688739	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21611746	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	17393978	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17899364	CNVD
Non-small cell lung cancer	19010865	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Trisomy 5 syndrome	21098271	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Lung adenocarcinoma	17086460	CNVD
Glioblastoma multiforme	22286061	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:189929600-189931800	Enhancers	Duodenum Smooth Muscle	Duodenum
2	chr1:189929800-189930400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:189929800-189930400	Enhancers	Colon Smooth Muscle	Colon
4	chr1:189929800-189930400	Enhancers	Fetal Lung	lung
5	chr1:189929800-189930400	Enhancers	Fetal Muscle Leg	muscle
6	chr1:189929800-189930400	Enhancers	Fetal Stomach	stomach
7	chr1:189929800-189930400	Enhancers	Rectal Smooth Muscle	rectum
8	chr1:189929800-189930400	Enhancers	Stomach Smooth Muscle	stomach
9	chr1:189930000-189930200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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