Variant report

Variant	esv3413153
Chromosome Location	chr10:42396033-42396901
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:42396677..42397179-chr2:92268827..92269338,2	MCF-7	breast:
2	chr10:42396404..42399699-chr10:42528302..42530349,4	MCF-7	breast:

Extended variants
information (count: 287 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:287 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs142875812	chr10:42396033-42396034	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs147362868	chr10:42396034-42396035	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs147265765	chr10:42396035-42396036	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs544913965	chr10:42396036-42396037	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs141687672	chr10:42396037-42396038	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs150527456	chr10:42396038-42396039	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs564605111	chr10:42396039-42396040	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs145157937	chr10:42396048-42396049	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs4038980	chr10:42396049-42396050	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs143831308	chr10:42396050-42396051	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs71229333	chr10:42396053-42396054	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs74212695	chr10:42396058-42396059	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs139782341	chr10:42396060-42396061	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs144505527	chr10:42396061-42396062	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs145194688	chr10:42396062-42396063	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs148705683	chr10:42396065-42396066	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs142357814	chr10:42396067-42396068	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs151266338	chr10:42396069-42396070	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs141625472	chr10:42396070-42396071	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs146021816	chr10:42396075-42396076	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs147821644	chr10:42396079-42396080	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs12570680	chr10:42396080-42396081	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs150365733	chr10:42396083-42396084	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs137922422	chr10:42396087-42396088	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs149450553	chr10:42396092-42396093	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs143016398	chr10:42396093-42396094	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs138618383	chr10:42396094-42396095	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs141628562	chr10:42396097-42396098	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs540623206	chr10:42396098-42396099	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs146379172	chr10:42396099-42396100	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs139652069	chr10:42396102-42396103	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs143066550	chr10:42396103-42396104	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs150683535	chr10:42396105-42396106	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs139702393	chr10:42396106-42396107	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs149779135	chr10:42396107-42396108	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs145700452	chr10:42396108-42396109	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs140653688	chr10:42396110-42396111	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs145444277	chr10:42396113-42396114	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs147826699	chr10:42396114-42396115	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs141297851	chr10:42396115-42396116	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs560616985	chr10:42396116-42396117	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs143615422	chr10:42396117-42396118	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs151017719	chr10:42396119-42396120	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs140876051	chr10:42396120-42396121	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs150099165	chr10:42396121-42396122	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs138527912	chr10:42396122-42396123	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs141645034	chr10:42396123-42396124	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs145303521	chr10:42396124-42396125	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs138424978	chr10:42396125-42396126	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs149606930	chr10:42396128-42396129	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42397200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
2	chr10:42373600-42397200	ZNF genes & repeats	GM12878-XiMat	blood
3	chr10:42373600-42397200	ZNF genes & repeats	HUVEC	blood vessel
4	chr10:42373600-42397400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
5	chr10:42373600-42399600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:42373600-42399600	ZNF genes & repeats	Fetal Kidney	kidney
7	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
14	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
15	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
19	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
20	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
21	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
22	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
24	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
25	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
26	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
27	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
28	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
29	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
30	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
31	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
32	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
33	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
34	chr10:42373600-42400800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
35	chr10:42373600-42400800	ZNF genes & repeats	Dnd41	blood
36	chr10:42373600-42400800	ZNF genes & repeats	HMEC	breast
37	chr10:42373600-42400800	ZNF genes & repeats	HSMMtube	muscle
38	chr10:42373600-42400800	ZNF genes & repeats	NH-A	brain
39	chr10:42373600-42401200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
40	chr10:42373600-42402200	ZNF genes & repeats	Colonic Mucosa	Colon
41	chr10:42373600-42402400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
42	chr10:42373600-42402400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
43	chr10:42373600-42402400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:42373600-42402400	ZNF genes & repeats	Fetal Stomach	stomach
45	chr10:42373600-42402600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
46	chr10:42373600-42402600	ZNF genes & repeats	Liver	Liver
47	chr10:42373600-42402600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
48	chr10:42373600-42402600	ZNF genes & repeats	Fetal Brain Male	brain
49	chr10:42373600-42402800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:42373600-42402800	ZNF genes & repeats	HepG2	liver

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