Variant report

Variant	esv3413360
Chromosome Location	chr11:93325554-93328002
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:126 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12792596	chr11:93325584-93325585	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs186525172	chr11:93325588-93325589	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs542987558	chr11:93325603-93325604	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs561099756	chr11:93325604-93325605	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs190840746	chr11:93325615-93325616	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs141274360	chr11:93325620-93325621	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs573207580	chr11:93325648-93325649	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs7130903	chr11:93325649-93325650	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs536611882	chr11:93325721-93325722	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs532567130	chr11:93325769-93325770	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs147763413	chr11:93325856-93325857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs533367613	chr11:93325886-93325887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs563371857	chr11:93325915-93325916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs180888085	chr11:93325970-93325971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs554956286	chr11:93326027-93326028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs12788445	chr11:93326042-93326043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs567109824	chr11:93326067-93326068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs186314513	chr11:93326096-93326097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs116812967	chr11:93326109-93326110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs571608223	chr11:93326120-93326121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs544138653	chr11:93326131-93326132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs369097168	chr11:93326195-93326196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs60833994	chr11:93326216-93326217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs369190361	chr11:93326242-93326243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs558870873	chr11:93326256-93326257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs4388844	chr11:93326267-93326268	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs112738351	chr11:93326419-93326420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs11825780	chr11:93326423-93326424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs191110546	chr11:93326431-93326432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs536315049	chr11:93326441-93326442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs555056562	chr11:93326443-93326444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs535877476	chr11:93326445-93326446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs74217716	chr11:93326453-93326454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs573110358	chr11:93326462-93326463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs59454571	chr11:93326474-93326475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs80053348	chr11:93326484-93326485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs370903061	chr11:93326485-93326486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs375265336	chr11:93326486-93326487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs368206188	chr11:93326488-93326489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs11020429	chr11:93326507-93326508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs59237799	chr11:93326516-93326517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs5025292	chr11:93326517-93326518	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
43	rs565231744	chr11:93326562-93326563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs11020430	chr11:93326596-93326597	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs577142981	chr11:93326603-93326604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs539758714	chr11:93326609-93326610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs183529382	chr11:93326610-93326611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs138943328	chr11:93326614-93326615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs187497520	chr11:93326635-93326636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs11020431	chr11:93326648-93326649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Mental retardation	21062444	CNVD
Cancer	21499728	CNVD
Breast cancer	19181860	CNVD
Breast cancer	17603634	CNVD
Mantle cell lymphoma	19029149	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93323200-93329000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:93324400-93325800	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links