Variant report

Variant	esv3413583
Chromosome Location	chr10:42597072-42599602
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNYL2-9	chr10:42598751-42598801	NONHSAT012853

Extended variants
information (count: 777 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:777 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs138235752	chr10:42597072-42597073	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs566748791	chr10:42597073-42597074	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs74217345	chr10:42597079-42597080	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs144268655	chr10:42597083-42597084	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs1914685	chr10:42597084-42597085	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs79814192	chr10:42597089-42597090	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs75230119	chr10:42597090-42597091	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs555350194	chr10:42597091-42597092	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs575149227	chr10:42597094-42597095	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs544115400	chr10:42597097-42597098	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs113091591	chr10:42597103-42597104	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs4949041	chr10:42597106-42597107	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs140600061	chr10:42597122-42597123	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs144236639	chr10:42597124-42597125	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs74195866	chr10:42597129-42597130	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs71278044	chr10:42597131-42597132	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs151137279	chr10:42597134-42597135	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs139003970	chr10:42597135-42597136	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs4586102	chr10:42597150-42597151	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs74194307	chr10:42597153-42597154	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs374106212	chr10:42597154-42597155	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs557653568	chr10:42597155-42597156	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs149908177	chr10:42597159-42597160	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs71239135	chr10:42597160-42597161	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs36191331	chr10:42597161-42597162	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs4949042	chr10:42597177-42597178	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs367695967	chr10:42597178-42597179	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs372909820	chr10:42597181-42597182	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs377212164	chr10:42597185-42597186	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs79653252	chr10:42597186-42597187	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs368344488	chr10:42597196-42597197	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs74188576	chr10:42597198-42597199	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs72482092	chr10:42597201-42597202	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs11816053	chr10:42597202-42597203	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs199700990	chr10:42597211-42597212	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs199663494	chr10:42597212-42597213	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs577797678	chr10:42597213-42597214	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs74198276	chr10:42597214-42597215	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs539949830	chr10:42597215-42597216	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs200596706	chr10:42597216-42597217	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs74486786	chr10:42597217-42597218	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs75054837	chr10:42597218-42597219	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs529009999	chr10:42597221-42597222	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs201990145	chr10:42597222-42597223	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs78406992	chr10:42597223-42597224	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs201581984	chr10:42597225-42597226	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs199737349	chr10:42597226-42597227	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs372618081	chr10:42597227-42597228	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs61846759	chr10:42597229-42597230	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs542600279	chr10:42597230-42597231	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:145 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42596600-42597800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:42596600-42598000	ZNF genes & repeats	Fetal Intestine Large	intestine
3	chr10:42596600-42598600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:42596600-42598600	ZNF genes & repeats	Psoas Muscle	Psoas
5	chr10:42596600-42600200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:42596600-42600200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:42596600-42600200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr10:42596600-42600200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
9	chr10:42596600-42600200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:42596600-42600200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:42596600-42600200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
12	chr10:42596600-42600200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
13	chr10:42596600-42600200	ZNF genes & repeats	Aorta	Aorta
14	chr10:42596600-42600200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
15	chr10:42596600-42600200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
16	chr10:42596600-42600200	ZNF genes & repeats	Colonic Mucosa	Colon
17	chr10:42596600-42600200	ZNF genes & repeats	Colon Smooth Muscle	Colon
18	chr10:42596600-42600200	ZNF genes & repeats	Placenta	Placenta
19	chr10:42596600-42600200	ZNF genes & repeats	Fetal Stomach	stomach
20	chr10:42596600-42600200	ZNF genes & repeats	Small Intestine	intestine
21	chr10:42596600-42600200	ZNF genes & repeats	Stomach Mucosa	stomach
22	chr10:42596600-42600200	ZNF genes & repeats	Spleen	Spleen
23	chr10:42596600-42600200	ZNF genes & repeats	HSMMtube	muscle
24	chr10:42596600-42600200	ZNF genes & repeats	Osteobl	bone
25	chr10:42596600-42600400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:42596600-42600400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
29	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
31	chr10:42596600-42600400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
32	chr10:42596600-42600400	ZNF genes & repeats	Brain Anterior Caudate	brain
33	chr10:42596600-42600400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
34	chr10:42596600-42600400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
35	chr10:42596600-42600400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
36	chr10:42596600-42600400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
37	chr10:42596600-42600400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
38	chr10:42596600-42600400	ZNF genes & repeats	GM12878-XiMat	blood
39	chr10:42596600-42600400	ZNF genes & repeats	Hela-S3	cervix
40	chr10:42596600-42600400	ZNF genes & repeats	NH-A	brain
41	chr10:42596600-42600600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
42	chr10:42596600-42600600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
43	chr10:42596600-42600600	ZNF genes & repeats	Primary B cells from cord blood	blood
44	chr10:42596600-42600600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
45	chr10:42596600-42600600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
46	chr10:42596600-42600600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
47	chr10:42596600-42600600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:42596600-42600600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr10:42596600-42600600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
50	chr10:42596600-42600800	ZNF genes & repeats	HUVEC	blood vessel

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