Variant report

Variant	esv3413628
Chromosome Location	chr10:37563459-37573277
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD30A-8	chr10:37570882-37570983	NONHSAT012764
2	lnc-ANKRD30A-8	chr10:37570105-37570207	NONHSAT012764
3	lnc-ANKRD30A-8	chr10:37569821-37569950	NONHSAT012764

Extended variants
information (count: 75 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:75 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192670840	chr10:37564249-37564250	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs111704469	chr10:37564280-37564281	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs535169488	chr10:37564299-37564300	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs188682555	chr10:37564307-37564308	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs556331341	chr10:37564308-37564309	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs568378877	chr10:37564314-37564315	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs537378758	chr10:37564315-37564316	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs556538109	chr10:37564316-37564317	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs576473459	chr10:37564333-37564334	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs545407536	chr10:37564352-37564353	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs377695594	chr10:37564356-37564357	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs572874241	chr10:37564403-37564404	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs371655106	chr10:37564434-37564435	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs192829050	chr10:37564441-37564442	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs151121246	chr10:37564442-37564443	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs561768942	chr10:37564472-37564473	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs576269819	chr10:37564503-37564504	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs544563038	chr10:37564505-37564506	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs563663983	chr10:37564547-37564548	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs545146808	chr10:37564555-37564556	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs564952240	chr10:37564566-37564567	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs528560565	chr10:37564567-37564568	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs112905358	chr10:37564575-37564576	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs189687987	chr10:37564580-37564581	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs527324982	chr10:37564599-37564600	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs181199117	chr10:37564600-37564601	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs548745994	chr10:37564602-37564603	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs141084526	chr10:37564603-37564604	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs56307799	chr10:37564642-37564643	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs530434089	chr10:37564660-37564661	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs1200825	chr10:37564664-37564665	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs183934549	chr10:37564677-37564678	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs113869395	chr10:37564678-37564679	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs6482026	chr10:37564723-37564724	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs150266156	chr10:37564724-37564725	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs188270780	chr10:37564738-37564739	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs181930234	chr10:37564793-37564794	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs534976089	chr10:37569832-37569833	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs548431892	chr10:37569937-37569938	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs568415959	chr10:37569946-37569947	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs377475147	chr10:37570151-37570152	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs369685316	chr10:37570164-37570165	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs552749654	chr10:37570892-37570893	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs376613651	chr10:37570935-37570936	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs535612725	chr10:37570982-37570983	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs111450558	chr10:37572816-37572817	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs573584457	chr10:37572852-37572853	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs542628692	chr10:37572862-37572863	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs562551618	chr10:37572953-37572954	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs113408008	chr10:37572954-37572955	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Bethlem myopathy	20302629	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hepatocellular carcinoma	16785998	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37564200-37564800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:37564200-37564800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:37572800-37574400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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